Vcra010841.1
Basic Information
- Insect
- Vespa crabro
- Gene Symbol
- bab1
- Assembly
- GCA_025728115.1
- Location
- JAITYU010012625.1:58528-60659[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-15 5.7e-12 44.9 0.1 4 45 354 395 351 395 0.92 2 2 0.0077 10 5.6 0.0 24 34 420 430 419 440 0.81
Sequence Information
- Coding Sequence
- ATGGCGAGCGCATcgcaacaatattgtctccgttggaacaaccaccgatcgaacttgcttactgtctttgacgaacttctacaaaatgaggcattcaccgacgttaccttggctgtggacggtggtctctctgtaaagtgtcacaaaatggtcctagcagcttgttcatcatatttccagacgctttttatcgatctaccatgtaaacatccaatcgtagtactcaaagatgtgaaatattgtgagatcaaggcaatattagaatacatgtatcgtggagaggtaaatgtcgcccaggaacaactcgctggtttattaaaagttgctgaagttttaaaagtcaagggtctTGTTGAGGAAAATGGTTCATCTCATGAACAACGAAACGAAGAACTCGAAACGTCGATGTCACCACCACCAGCGATCAGCACTAGCACAACCAACAGTATTGCGCATAGCAGTGGCCATATTTCACCACCCCATTCAACCGGAAGTTCTTATAATCCATACGGTAAATCATCTACGATGCCAATTGATAGAGGATGTATGTCCTTACCGATGTGGGCATTGTCAGGACTACCACTTCCACAACATGCGACTTCCAGTCATCAGGCAAGCTCTCAATCACATTCGCAACATTCCACTATCGTGGGTACTTCTTACGACAACGGTTTCGAAACGTCATCGCCCATAAATCCAAAACGAAAAAAATATTGTACATCAAATGTCATGATGAATCGAGACACGCCGATATTGCGAACAGTTTTGGGTCAAGGGCATGCTGATAGTTCACAGAACATGACCCTTATGCCACCAGATAGTCATGATAATAACTTCCGTACTAATGCCAATGGATCGTCAACTGAAAATTCCAGACGAGATAGCAGCGATCTTCCCAATTCTGAACCAGTTCATAGTCCTTACACCGACGTTTCCATGATAGACGAAGAAGACAAACAACCATCACCTCAACCCTACGTCGATACTAACGCAGGTGTGGTTAGTTACATCACAACCCAGAAGCCCGAATGGAAACGTTATAAACAATATACACGGCACGACATCATGTCAGCAATCGAGGCAGTAAGATCAGGAATGAGTGCATTACAAGCGGCGAGAAAGTACGGTGTCCCATCGCGTACACTTTACGATAAAGTAAAAAAACTTGGTATCACGACCTCCCGACCTTTTAAGCGCGGTTCGAACGGTGCTGGAGGAGCTTGTTTTCCCTATGGTATCGGTGGAAACGCAAACGGCAGCATTTATGGTATCAACAGTAGTACTCTATCGGAAAGTGAAAATGAAAACAGCAACGCCCTATACGAGAGTTCTTCCACCATTTTGGAAACGAATTACGTTAAGAGCAGGGATACCTCGACTGAACGTGAATCCAACATGGAAACTGGTCAATCTAGTCCAACTTCAGGACTTCATTTGATCAAAGAAGAACCTCAACAAAGGAACGACGATCAGGTTGAGGATCTTTCGGTAAATCGTAAGTCGGATATACGAGTAATAATACCACCATCGTCGAACATCAAAGAGGAAGATGATATTTCCGATAATTCTAATCGTAATTGA
- Protein Sequence
- MASASQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLAVDGGLSVKCHKMVLAACSSYFQTLFIDLPCKHPIVVLKDVKYCEIKAILEYMYRGEVNVAQEQLAGLLKVAEVLKVKGLVEENGSSHEQRNEELETSMSPPPAISTSTTNSIAHSSGHISPPHSTGSSYNPYGKSSTMPIDRGCMSLPMWALSGLPLPQHATSSHQASSQSHSQHSTIVGTSYDNGFETSSPINPKRKKYCTSNVMMNRDTPILRTVLGQGHADSSQNMTLMPPDSHDNNFRTNANGSSTENSRRDSSDLPNSEPVHSPYTDVSMIDEEDKQPSPQPYVDTNAGVVSYITTQKPEWKRYKQYTRHDIMSAIEAVRSGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGAGGACFPYGIGGNANGSIYGINSSTLSESENENSNALYESSSTILETNYVKSRDTSTERESNMETGQSSPTSGLHLIKEEPQQRNDDQVEDLSVNRKSDIRVIIPPSSNIKEEDDISDNSNRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513393;
- 90% Identity
- iTF_01512265; iTF_01513393; iTF_01514243; iTF_01514906; iTF_01513565; iTF_01514749; iTF_01514078; iTF_01512755; iTF_01512909;
- 80% Identity
- iTF_01512265;