Ucar001351.1
Basic Information
- Insect
- Uropetala carovei
- Gene Symbol
- -
- Assembly
- GCA_036926305.1
- Location
- JAXCHB010000001.1:12119162-12124262[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8e-11 1.9e-07 33.3 0.0 2 39 72 110 71 114 0.91 2 4 3.1e-09 7.4e-06 28.2 0.0 1 38 129 166 129 172 0.89 3 4 1.6e-15 3.8e-12 48.4 0.0 3 44 186 227 184 228 0.95 4 4 5.7e-18 1.4e-14 56.2 0.0 1 40 235 275 235 279 0.92
Sequence Information
- Coding Sequence
- ATGATGATAACACCAGAGCTACTTGGTCTTATACCATCATCATCAGGACACTCAGATGGCAGTGAGGTATCTGGGGCCCctggaggaggcggaggaggtggaggaggcaGCAGCattggaggaggaggtgggggcggtggaggaggaggaggtggcggTGGTGGTGGAGGCGGCGGTGGCAAGTGTGGTCCTGGAGGCCCTAAGAACTGGAACCACGAAGATATGGAGATGGCCCTTGATGCCCTGCGCTCCCACGCCATGAGTCTTACACGAGCATCTGCTACATTTGGAATCCCGTCCACCACTCTCTGGCAACGTGCTCATCGTCTTGGCATCGACACTCCAAAGAAGGACGGTGGTGGTCCACCGGGTGGGAAGTCTTGGTCAGAGGATGACTTGACAACTGCCCTTGATGAACTCCGTGCTGGTCGCATCTCTGCTAATCGTGCAGCCAAGGTGTATCGCATACCAAGTAGCACGTTATATAAAATTGCAAGGAAAGAAGGGATCAAACTTTCTGCCCCCTTTAATGCCACTCCCACAACTTGGTCATCCGAAGATCTTAACCGAGCTCTAGAAGCAATCCGTCAGGGCACATCAGTACAGAGGGCATCATCAGAGCATGGCATACCTAGTGGCACACTTTATGGGAGGTGCAAAAGAGAGGGTATTGAACTCTCTAAGAGTAACCCAGTTCCATGGTCGGAGGATGATATGAATGAGGCGCTTGAAGCAGTACGGGTTGGTGAGATGAGCATCAACCAAGCTGCAATCCATTACAACCTTCCCTATTCTTCCCTCTACGGGCGGTTCAAAAGGATTCGCTTTGAGGCTGAAGGAGGAGGAGTTGAAGGAGGCTCGGCTCAAGGTCCTGCAGGTCCCGGGAGTGGCAGTGGGATCATGCTCACCACCAGTGGAGGAGGACACGAGGGCATCGACTTTGAGATGTACAGCAGCTGA
- Protein Sequence
- MMITPELLGLIPSSSGHSDGSEVSGAPGGGGGGGGGSSIGGGGGGGGGGGGGGGGGGGGGKCGPGGPKNWNHEDMEMALDALRSHAMSLTRASATFGIPSTTLWQRAHRLGIDTPKKDGGGPPGGKSWSEDDLTTALDELRAGRISANRAAKVYRIPSSTLYKIARKEGIKLSAPFNATPTTWSSEDLNRALEAIRQGTSVQRASSEHGIPSGTLYGRCKREGIELSKSNPVPWSEDDMNEALEAVRVGEMSINQAAIHYNLPYSSLYGRFKRIRFEAEGGGVEGGSAQGPAGPGSGSGIMLTTSGGGHEGIDFEMYSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01212600;
- 90% Identity
- iTF_01402072; iTF_01212600; iTF_01286293; iTF_00261246;
- 80% Identity
- -