Ppen051334.1
Basic Information
- Insect
- Platycnemis pennipes
- Gene Symbol
- -
- Assembly
- GCA_933228905.1
- Location
- CAKOGJ010000907.1:221695-228549[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.1e-11 2.5e-07 33.2 0.0 2 39 85 123 84 127 0.91 2 4 2.3e-09 9.8e-06 28.2 0.0 1 38 142 179 142 185 0.89 3 4 1.2e-15 5e-12 48.3 0.0 3 44 199 240 197 241 0.95 4 4 4.3e-18 1.8e-14 56.1 0.0 1 40 248 288 248 292 0.92
Sequence Information
- Coding Sequence
- ATGATTACCCCAGAACTTCTTGGTCTTATTCCATCTTCATCTGGACACTCAGATGGCAGTGAGGTATCGGGAGCTCCAGGAGGAGGAGGTGGAGCTGGAGGCGGAGGGGGCAGTGGAATTTCATCGGGTGGGGGTGGTGGTGGGGGCGGAGGAGGGGGTGGGGGCGGCGGTGGGGGAGGAGGGGGAGGGGGTGGTGGCAGCGGTGGAGGGGGCGGTGGAAAATGTGGCCCTGGTGGCCCCAAAAACTGGAACCATGAAGATATGGAGATGGCTCTCGATGCACTGCGATCCCATGCCATGAGTCTGACCCGGGCCTCTGCCACTTTTGGGATCCCGTCCACCACACTCTGGCAGCGAGCTCACCGCCTTGGTATTGATACGCCCAAGAAGGATGGTGGTGGCCCACCTGGAGGGAAGTCATGGTCAGAGGATGACTTGACAACTGCCCTTGATGAACTGCGTGCTGGTCGTATTTCTGCTAACCGTGCTGCAAAGGTATATCGCATCCCAAGTAGCACACTATATAAGATTGCAAGGAAGGAAGGGATCAAGCTCTCTGCCCCATTCAATGCCACACCCACGACATGGTCATCTGAGGACCTTAATCGGGCCCTTGAAGCAATTCGTCAGGGGACATCTGTGCAGAGGGCATCATCTGAACATGGAATACCCAGTGGCACTCTTTATGGGAGGTGCAAGAGGGAAGGAATTGAACTCTCCAAGAGCAACCCAGTCCCGTGGTCGGAAGATGACATGAACGAGGCACTTGAAGCTGTTCGTGTTGGTGAGATGAGCATTAACCAAGCTGCGATCCACTATAACCTGCCCTATTCTTCATTGTACGGCCGGTTCAAGAGGATTCGATTTGAGGCAGAGGGTGGTGGGGTTGAAAGTGGCTCTGCGCAAGGTCCTGCTGGTCCAGGAAGTGGAAGTAGCATCATGCTAACAACCAGCGGGGGAGGGCATGAGGGCATCGACTTTGAGATGTACAGCAGCTGA
- Protein Sequence
- MITPELLGLIPSSSGHSDGSEVSGAPGGGGGAGGGGGSGISSGGGGGGGGGGGGGGGGGGGGGGGGSGGGGGGKCGPGGPKNWNHEDMEMALDALRSHAMSLTRASATFGIPSTTLWQRAHRLGIDTPKKDGGGPPGGKSWSEDDLTTALDELRAGRISANRAAKVYRIPSSTLYKIARKEGIKLSAPFNATPTTWSSEDLNRALEAIRQGTSVQRASSEHGIPSGTLYGRCKREGIELSKSNPVPWSEDDMNEALEAVRVGEMSINQAAIHYNLPYSSLYGRFKRIRFEAEGGGVESGSAQGPAGPGSGSSIMLTTSGGGHEGIDFEMYSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01504595; iTF_01286293; iTF_01402072; iTF_00261246;
- 90% Identity
- iTF_01504595;
- 80% Identity
- -