Pnym109315.1
Basic Information
- Insect
- Pyrrhosoma nymphula
- Gene Symbol
- -
- Assembly
- GCA_963573305.1
- Location
- OY754335.1:12947677-12953576[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-10 2.7e-07 33.2 0.0 2 39 83 121 82 125 0.91 2 4 4.4e-09 1e-05 28.2 0.0 1 38 140 177 140 183 0.89 3 4 2.3e-15 5.3e-12 48.3 0.0 3 44 197 238 195 239 0.95 4 4 8.1e-18 1.9e-14 56.1 0.0 1 40 246 286 246 290 0.92
Sequence Information
- Coding Sequence
- ATGATTACCCCAGAACTACTTGGTCTTATTCCTTCTTCATCAGGGCACTCAGATGGCAGTGAGGTATCTGGAGCTCCggggggaggtggtggaggaggagctGGTTCCGGAGGTGGGGGCGGCAGTGGAGTCACATcgggtgggggaggtgggggcggaggagggggtgggggtggtggaggaggcgggggaggaggaggagggggtgggggtaagTGTGGTCCCGGGGGTGCCAAGAACTGGAACCACGAAGACATGGAAATGGCCCTCGACGCACTGCGGTCCCATGCTATGAGTCTCACCCGGGCCTCAGCCACTTTTGGGATCCCGTCCACCACGCTTTGGCAGCGAGCGCACCGCCTTGGCATTGACACGCCTAAGAAGGATGGTGGCGGTCCACCTGGAGGAAAGTCTTGGTCGGAGGATGACTTGACGACTGCCCTTGATGAACTGCGTGCTGGCCGTATTTCTGCTAACCGTGCTGCAAAGGTTTATCGCATCCCAAGTAGCACACTGTATAAGATTGCAAGGAAGGAAGGAATCAAGCTCTCTGCTCCGTTCAATGCAACACCCACAACCTGGTCATCTGAGGACCTTAATAGGGCCCTTGAAGCCATTCGACAGGGGACATCTGTACAGAGGGCATCATCAGAGCATGGCATACCCAGTGGCACACTTTATGGTAGGTGCAAGAGGGAGGGAATCGAACTGTCCAAAAGCAATCCAGTCCCATGGTCGGAAGATGACATGAACGAGGCACTTGAGGCTGTTCGTGTTGGTGAGATGAGCATCAACCAAGCTGCGATCCACTACAACCTGCCATACTCTTCCTTGTACGGCCGATTCAAGAGGATTCGATTCGAGGCGGAGGGTGGTGGGGTGGAGGGTGGCTCTGCACAAGGTCCTGCTGGTCCAGGAAGTGGAAGTAGCATCATGCTTACAACTAGCGGAGGAGGACACGAGGGCATCGACTTTGAGATGTATAGCAGCTGA
- Protein Sequence
- MITPELLGLIPSSSGHSDGSEVSGAPGGGGGGGAGSGGGGGSGVTSGGGGGGGGGGGGGGGGGGGGGGGGGKCGPGGAKNWNHEDMEMALDALRSHAMSLTRASATFGIPSTTLWQRAHRLGIDTPKKDGGGPPGGKSWSEDDLTTALDELRAGRISANRAAKVYRIPSSTLYKIARKEGIKLSAPFNATPTTWSSEDLNRALEAIRQGTSVQRASSEHGIPSGTLYGRCKREGIELSKSNPVPWSEDDMNEALEAVRVGEMSINQAAIHYNLPYSSLYGRFKRIRFEAEGGGVEGGSAQGPAGPGSGSSIMLTTSGGGHEGIDFEMYSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01212600;
- 90% Identity
- iTF_01504595;
- 80% Identity
- -