Tlin012214.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- bab1
- Assembly
- GCA_949699805.1
- Location
- OX453039.1:20550554-20559407[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.9e-11 5.1e-08 33.3 0.0 2 35 21 55 20 61 0.91 2 3 2.6e-17 2.8e-14 53.3 0.0 1 43 149 192 149 194 0.95 3 3 5.4 5.7e+03 -2.1 1.4 6 15 268 277 266 280 0.88
Sequence Information
- Coding Sequence
- ATGAATCGATTTCTAGCCGACTATTCGAGCCTCTTGAAGCTGAAGGCGCCAACCTGGACGCGTCACGATCTCCAAGAGGCCATCGAAGCTGTGGTAACCCAAAAAATGCGCTTCACCCAAGCATCGACAAAGTATGGCATTCCAAAAGGCACACTCTACGACAATATCCTCGGGAAATCGAAGAGAATGATGGTTCTTGAAGAAGCTGGCTTGAATTCCCATGAAGAAACGGCTGTTCTCCAATTTTGCTGTGACATTACTGTCAGTCCTTACAACAGACGAACGAAAAAGTCTCTAAACGCTATTCTTAATTTTGTGGAAAGACTGAGACGTCGACACAGCTACCAGTACCAGCTTCAATCGCTCTGGCAAAAGTGCTGGAACACGAATTCGGGACTGGTGCACAATCTTCGCTTCCGGGAACGCGGCCCCCTTAAGTCATGGAGACCGGAAACGATGGCCGAAGCGATCTTCAGCGTTCTTAAAGAAGGACTTTCACTCAGTCAGGCTGCAAGGAAATACGACATCCCCTATCCGACATTCGTGCTGTACGCCAACCGAGTTCATAATATGCTTGGGCCTAGCTCCGATGGCGGGGCCGATCTTCGACCGAAGGGTCGAGGCAGACCTCAGAGGATTCTACTCGGCGTGTGGCCGGACGAACACATCCGAGGTGTAATTCGTGCGGTGGTTTTTCGCGACGGTCACATCGTCAAAGACGAGCAGAATCCGATGTATCCGAGCTTGGCGAATTATGCGTGCAACGGGCCGGAGGGTGCGGTCAGTCCCGGTGCCGCTGCGGCTGCTGCGGTCGCCGCGGTTGCTCAAGGTCTTCGACACCAAATGTGCAGTATGGTAGCAGCTGCGCAGTCCCATCAGCACGACATGATAGCGACGAACCTATCGGCAAATTTTCAGGCAGCGGTCCAGGTCAGCCAGCACCATTTGAACAACAATAGTCCAGcgagcaacaacaacaacaataacaacaacaacaacaacagcaacaacagaaATTCGCCGCTGATATTGGGACTTCCGAGTCCAGGATCAGGCGGTCCACCGGAAAGTCCAATGGAGGGAAGTCCACTCGCGAGTCCTTTAGCACCATTAATGGATCCCGCTCACATACCGAGCAGCGTTGAAGTCGGAATTGGCGTCAGCGGAATGACGTACAAACCAACGCGCAGTTTCGTTAGTCCACGACCGGAGAATCTCTTCCAAGAGGATATCGCCGACCTCGTCAAGAGTCCTCATTGCCACAAGGACAAGGACAAGGTCCCCGTGAAACTCGAGCCACTTTCGGATTCGCGAAGTGAGCAGTAA
- Protein Sequence
- MNRFLADYSSLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMVLEEAGLNSHEETAVLQFCCDITVSPYNRRTKKSLNAILNFVERLRRRHSYQYQLQSLWQKCWNTNSGLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSSDGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHIVKDEQNPMYPSLANYACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAQSHQHDMIATNLSANFQAAVQVSQHHLNNNSPASNNNNNNNNNNNSNNRNSPLILGLPSPGSGGPPESPMEGSPLASPLAPLMDPAHIPSSVEVGIGVSGMTYKPTRSFVSPRPENLFQEDIADLVKSPHCHKDKDKVPVKLEPLSDSRSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380983;
- 90% Identity
- iTF_00059369; iTF_00414217; iTF_01364553;
- 80% Identity
- -