Tzet001481.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachymyrmex zeteki
Gene Symbol
pita
Assembly
GCA_001594055.1
Location
NW:2517106-2521882[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 7.3e-05 0.0048 16.6 2.0 2 23 299 320 298 320 0.97
2 11 0.0013 0.087 12.6 1.8 1 23 328 351 328 351 0.95
3 11 0.00065 0.043 13.6 2.7 1 23 391 413 391 413 0.98
4 11 4.2e-07 2.8e-05 23.6 1.5 2 23 467 488 466 488 0.97
5 11 5.4e-05 0.0035 17.0 1.1 1 23 493 516 493 516 0.95
6 11 6.5e-05 0.0043 16.7 0.3 1 23 554 576 554 576 0.97
7 11 7.3e-07 4.8e-05 22.9 1.7 1 23 586 608 586 608 0.96
8 11 1.7e-06 0.00011 21.8 1.2 1 23 614 636 614 636 0.99
9 11 8.3e-06 0.00055 19.5 0.2 1 23 642 664 642 664 0.98
10 11 3.4e-05 0.0022 17.6 4.5 1 23 670 692 670 692 0.98
11 11 0.00096 0.063 13.1 0.5 1 21 698 718 698 719 0.94

Sequence Information

Coding Sequence
ATGGCAGTTCCGAGCGATGACGCGATGAATAGCACAGTACGCGTGGAACAGCTCGTGGGCGACGAATGCCGCATCTGTCTCAAGTCCTGCACGGAGGTGTGCCAGCTCTTCCACAACGACAGCGGGATACCGGAGAAGTTGATGGCCATCGCCGCTGTACAGgTGGAGGTAGGGGACGGTCTGCCAGCTTACATCTGTTCAGCTTGCAATGATTTGCTTGACGTGTCCTATGACTTCAGATGCCAGATTCAGAACGCCGACGAGAGGTTACGGCAGTTTCTGAAATTACAGATTCAGCCTATGCTGCACGACAAACATGCGAAAGATAGCATGATAATCAAAGATATCACGGATGTCATATCCGACGTAGTATcttgtaaaaaagataatcATATAGAGCAAGGTATTTCCTCATCTCACGATATTGTTGCGTTTAATAATACTGCCGTTCAGTCTGATATGGTAATTGATGAATCTCACATAAGCCACAAGATACAAAAGACGACAGAAATTATAGAACCAAGTGAAAAAGATGCACTGTACGATACAGTTAAAGATAATGTACATAATGTTGAAATGATGGAAGTAGCCTTTTGTCATGAGGCACATATGGATGATGCAGTTGCCGATCATTCAGATCGATTTTCCAGCTCAACAACGGAAGACAGATGTGTCAAACAAGAAGATTTAATACTACCTGAAGATAATGAGACATCGGGAAATTTAACGGATGAAAATAGGaaagatacattaaaaattgagattaagAATACATTGCTGGAAAATTTCAACGACATTTCGAAGGAAACCATGGTATTAGGAATGGATATGAAAAGCGTCACAAATTGTAGTGATGACGAGGAGAAACCACTTATAAGCAGGACAACGAGAAAGAAGTGCTTGCATTGCATCAAATCGTTTGCGACGAAAGTTGCGTTGCAGCGACACATGAACGTAcacaaaaacaaaacaaagCTACGTTTCGTGTGCATCATATGTAACAAGCAGTTCTCGAATATCGATAAATTGAAGAATCACGTGCTTACGTGTCACGAGACGCCAGATAGTAAAGCGTCACAAGATTACAGAAAGACAAATAAAGTGTTGGCAAAAGTTACTAGAAGTGGCACCGTTATGGACAGCACGagggaagaaaagaaaaacttcAAGTTTACGTGCAAAGTCTGTtcgaaacaatttatatatcagaAATCCTTTTTGTCTCATGCCAAAAGTCATGTTGAATATAATGTGAATACGGACGATGTACTTGAGCAATCTGCGAATGATACGACGAGTGAACAAAAAAATAGGATGCCAACATTCAGAGAAAATGAATCtgaggaggaggaagaagaagaagatgacGATGACAGTGATTTACCAATCAAAAGTCTACAGTGTACTCAGTGCGGCAAACTTTTTGCTACAAAGAGAAACCTGAAGAGGCATATCTCGACGCACAGTGGCTTGAAGTTTAATTGTTCGACATGCGGTAAAGGATTTTCGAGAATCGACAAGCTGAAAGATCACGAACAGTCGAAACACAAAGAGGAAATATTCGGTAACACTGATGACGAAGACTATGACGAGGAGGATAACGAGAGCAAAATCAATGAGAATTCCGAAAACCGAAAGAAAGACCGACACAACAGGCCACATAAGTGCATGCTTTGTCCAAAGGCCTTCGCACAGCCTCAATCACTGGCAAATCACGTTGAGAGGCATAAACGGGTGAAGGACACGCAGAAACGGTTTCTCTGCGAGAAATGTAGCAAGTGCTTTGCTCAGAGTGGGTCGCTGGTGGCACATATGCGTACACATACTGGCGTCAAGCCATATGTATGCAATGTATGCAGTCGTGCCTTCACCAAGAGCACGTATTTACAATTGCATCTGAGAACTCATAGCGGTGAGAAACCGTATATCTGCCAATACTGTAGTAGAGCGTTTGCCAGGGCCAACACTCTGGCGCGGCACATCACCATGCACACTGGTGAGGCCAAATATCATTGCAATATCTGCACCAAGTCCTTCCGACGATTAACCTCGCTGAACGAACACACGTATACACATACCGGTCAACGACCGTACGCGTGCAAGCTATGTACTAAAAGATACAACAATGCCGGCTCATTATACGCTCATACGAAGAAGTGCAAGGCGCAGCAATTGTCCAACTCAACAACGTCTGCATATGCAGTGTCCACGGCAGATAATGCGCCGCAGCAGAACGACGCATCTATGCCTCTACTAATATATTCTCCGAGAAAGCTGGTAGAAGAAGCAGCTGTTGGTCAAGTTGTATCGACGCCGCAATATATGGTAACAAATGTGCACAATCAAAAAACAGTGCCGCCCAACGTGATCCAACCGTACGCCGTAGAGGATCCGAATGTGTATAATTCAAAACAGTTTAAGAACTCGTATTATGCTATTTATCCAAACATGCAATAA
Protein Sequence
MAVPSDDAMNSTVRVEQLVGDECRICLKSCTEVCQLFHNDSGIPEKLMAIAAVQVEVGDGLPAYICSACNDLLDVSYDFRCQIQNADERLRQFLKLQIQPMLHDKHAKDSMIIKDITDVISDVVSCKKDNHIEQGISSSHDIVAFNNTAVQSDMVIDESHISHKIQKTTEIIEPSEKDALYDTVKDNVHNVEMMEVAFCHEAHMDDAVADHSDRFSSSTTEDRCVKQEDLILPEDNETSGNLTDENRKDTLKIEIKNTLLENFNDISKETMVLGMDMKSVTNCSDDEEKPLISRTTRKKCLHCIKSFATKVALQRHMNVHKNKTKLRFVCIICNKQFSNIDKLKNHVLTCHETPDSKASQDYRKTNKVLAKVTRSGTVMDSTREEKKNFKFTCKVCSKQFIYQKSFLSHAKSHVEYNVNTDDVLEQSANDTTSEQKNRMPTFRENESEEEEEEEDDDDSDLPIKSLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRIDKLKDHEQSKHKEEIFGNTDDEDYDEEDNESKINENSENRKKDRHNRPHKCMLCPKAFAQPQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNICTKSFRRLTSLNEHTYTHTGQRPYACKLCTKRYNNAGSLYAHTKKCKAQQLSNSTTSAYAVSTADNAPQQNDASMPLLIYSPRKLVEEAAVGQVVSTPQYMVTNVHNQKTVPPNVIQPYAVEDPNVYNSKQFKNSYYAIYPNMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01476429;
90% Identity
iTF_01476429; iTF_00016199; iTF_00014894; iTF_01261974; iTF_00182131; iTF_00181475; iTF_00016839; iTF_00015552; iTF_00182773;
80% Identity
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