Basic Information

Insect: Acromyrmex charruanus
Gene Symbol: -
Assembly: GCA_017607545.1
Location: JAANIC010002949.1:1871873-1875681[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6e-05 0.0031 16.9 1.6 2 23 300 321 299 321 0.97

2 11 2.4e-05 0.0012 18.2 1.4 1 23 329 352 329 352 0.97

3 11 0.0007 0.036 13.6 2.7 1 23 392 414 392 414 0.98

4 11 4.5e-07 2.4e-05 23.6 1.5 2 23 469 490 468 490 0.97

5 11 5.8e-05 0.003 17.0 1.1 1 23 495 518 495 518 0.95

6 11 0.00012 0.0061 16.0 0.3 1 23 564 586 564 586 0.97

7 11 7.9e-07 4.1e-05 22.9 1.7 1 23 596 618 596 618 0.96

8 11 1.8e-06 9.2e-05 21.7 1.2 1 23 624 646 624 646 0.99

9 11 9e-06 0.00047 19.5 0.2 1 23 652 674 652 674 0.98

10 11 3.7e-05 0.0019 17.6 4.5 1 23 680 702 680 702 0.98

11 11 0.001 0.054 13.0 0.5 1 21 708 728 708 729 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6e-05	0.0031	16.9	1.6	2	23	300	321	299	321	0.97
2	11	2.4e-05	0.0012	18.2	1.4	1	23	329	352	329	352	0.97
3	11	0.0007	0.036	13.6	2.7	1	23	392	414	392	414	0.98
4	11	4.5e-07	2.4e-05	23.6	1.5	2	23	469	490	468	490	0.97
5	11	5.8e-05	0.003	17.0	1.1	1	23	495	518	495	518	0.95
6	11	0.00012	0.0061	16.0	0.3	1	23	564	586	564	586	0.97
7	11	7.9e-07	4.1e-05	22.9	1.7	1	23	596	618	596	618	0.96
8	11	1.8e-06	9.2e-05	21.7	1.2	1	23	624	646	624	646	0.99
9	11	9e-06	0.00047	19.5	0.2	1	23	652	674	652	674	0.98
10	11	3.7e-05	0.0019	17.6	4.5	1	23	680	702	680	702	0.98
11	11	0.001	0.054	13.0	0.5	1	21	708	728	708	729	0.94

Sequence Information

Coding Sequence: ATGGCAGTTCCGAACGATGACGCGATGAATAACACAGCACGCGTGAAACAGCTCGTGGGTGACGAATGCCGCATCTGTCTCAAGTCCTGCACGGAGGCGTGCCAGCTTTTCCACAACGACAGCGGGATACCGGAGAAGTTGATGGCTATCGCCGCTGTACAGGTGGAGATAGGGGATGGTCTGCCAGCTTATATCTGTTCAGCTTGCAATGATTTGCTCGACGTGTCCTATGACTTCAGATGCCAAATTCAGAACGCCGACGAGAGGCTACGGCAGTTTTTGAAGTTGCAGATTCCTATGCTGCACGACAAACATGCGAAAGATAGTATGATAATCAAAGATATTGCGGATGTCATATCTGATGTAGTATCTTGTAAAAAAGGTAATCATATAGAGCAAGGTATTTCCTCGTCTCATGATATCGTTGCGTTTAATAATACTGTCGTTCAGTCTGATATGGTAATTGATGAATCTCACATAAGTCACAAGATACAAAAGACGACAGAAATTATAGAACCAAGTGAAAAAGATGTATTGTACGGTACAGTTAAAGATAATGTACATAATGCTGAAATGATAGAAGTAGCCTTGTGTCATGAGACACACATGGATGATGCAGTTGCTGATCATTCAGATCGATTTTCCAGTTCAACAACGGAAGACAGATGTATCAAACAAGAAGATTTAATACTACCTGAAGATAATGAGACATCGGGAAATTTAACAGATGAAAATAGAGaagatacattaaaaattgaagcTAAAAATGATGCATTACTGGAGAATTTTAATGACCACATTTCGAAGGAAACCATGGTGTCAGGAATGGATACGAAAAGCGTCATAAATTGTAGTGATGACGAGGAAAAACCACTTATAAGCAGGACAACGAGACAGAAATGCTTGCATTGCATCAAATCATTTGCGACAAAAGTTGCGTTGCAGCGACACATGAACGTACACAAACACAAGACAAAGCTATGTTACGTGTGTGTCGTGTGCGACAAGCAGTTCTCGAATATCGAGAAATTGAAGAGTCACATGCTCATGTGTCACGAGACGATAGATAGTAAAGCGTCACAAGATGACAGAAAGGCAAATAAAGTGTCGGCGAAAGTTACTAGAAGTAGCATCGTGACGGATAGCATGagggaagaaaagaaaaatttcaagtttaCATGCAAAGTCTGCtcgaaacaatttatatatcagaAATCCTTTTTGTCTCATGCCAAAAGTCATGTTGAATATAACGTGGATACATCGGATGATGTACTTGAGCAATCTGCGAATGATACAACGAATGAACAAAAAGATAGAATGCCAATATTCAGAGAAAATGAATccgaggaggaagaagaagaagaggatgATGATGATAGTGATTTACCGATCAAAAGTCTACAGTGTACTCAGTGCGGCAAACTTTTTGCTACAAAGAGAAACCTGAAAAGGCATATCTCGACGCACAGTGgcttgaaatttaattgttcgACATGCGGTAAAGGATTTTCGAGAATCGACAAGCTGAAGGATCACGAACAATCGAAACACAAAGAGGAAATATTCGGCAACACTGACGATGAAGATGATTACGAGGAGGATAACGAGAGTAAAATCAACGAGAATTCCGAAAATCGAAAGAAGGCAAGTATTTTATGTGAATtctatGACCGACACAACAGGCCACATAAGTGCATGCTTTGTCCAAAGGCTTTCGCACAAGCTCAATCTCTAGCAAACCACGTAGAGAGGCATAAACGGGTGAAGGACACGCAGAAACGATTTCTCTGCGAGAAATGTAGCAAGTGCTTTGCTCAGAGTGGGTCGCTGGTGGCACATATGCGTACACATACCGGCATCAAGCCATATGTATGCAACGTATGCAGTCGTGCCTTCACCAAGAGCACGTATTTACAGTTGCATCTGAGAACTCATAGTGGTGAGAAACCGTATATTTGCCAGTATTGTAGTAGAGCGTTTGCCCGGGCCAATACTCTGGCGCGGCACATCACCATGCATACTGGTGAGGCCAAATATCATTGCAACATCTGCACCAAGTCCTTCCGACGATTGACTTCGCTGAACgaacatacatatacacatactgGTCAACGACCGTACGCGTGCAAGCTCTGTACTAAAAGATACAACAATGCCGGCTCGTTATATGCTCATACGAAGAAATGCAAGGCGCAGCAATTGTCCAACTCGACAACGTCTGCATATGCGGTATCCACGGCAGATAATGCGCCGCAGCAGAACGACGCGTCTATGCCCCTACTAATATATTCCCAGAGGAAGCTGGTAGAAGAAGCGGCTGTTGGTCAAGTTGTATCCACGCCGCAATATATGGTAACAAATGTGCACAATCAAAAAACAATATCGCCCAACGTAATCCAACCATACGCCGTAGAGGATCCGAATGTGTACAATTCAAAACAGTTTAAGAACTCGTATTATGCTATTTATCcaaatatgcaa
Protein Sequence: MAVPNDDAMNNTARVKQLVGDECRICLKSCTEACQLFHNDSGIPEKLMAIAAVQVEIGDGLPAYICSACNDLLDVSYDFRCQIQNADERLRQFLKLQIPMLHDKHAKDSMIIKDIADVISDVVSCKKGNHIEQGISSSHDIVAFNNTVVQSDMVIDESHISHKIQKTTEIIEPSEKDVLYGTVKDNVHNAEMIEVALCHETHMDDAVADHSDRFSSSTTEDRCIKQEDLILPEDNETSGNLTDENREDTLKIEAKNDALLENFNDHISKETMVSGMDTKSVINCSDDEEKPLISRTTRQKCLHCIKSFATKVALQRHMNVHKHKTKLCYVCVVCDKQFSNIEKLKSHMLMCHETIDSKASQDDRKANKVSAKVTRSSIVTDSMREEKKNFKFTCKVCSKQFIYQKSFLSHAKSHVEYNVDTSDDVLEQSANDTTNEQKDRMPIFRENESEEEEEEEDDDDSDLPIKSLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRIDKLKDHEQSKHKEEIFGNTDDEDDYEEDNESKINENSENRKKASILCEFYDRHNRPHKCMLCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNICTKSFRRLTSLNEHTYTHTGQRPYACKLCTKRYNNAGSLYAHTKKCKAQQLSNSTTSAYAVSTADNAPQQNDASMPLLIYSQRKLVEEAAVGQVVSTPQYMVTNVHNQKTISPNVIQPYAVEDPNVYNSKQFKNSYYAIYPNMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01476429;
90% Identity: iTF_01477803;
80% Identity: -