Basic Information

Insect: Atta colombica
Gene Symbol: -
Assembly: GCA_001594045.1
Location: NW:1192088-1196646[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.4e-05 0.0034 16.9 1.6 2 23 301 322 300 322 0.97

2 11 2.2e-05 0.0012 18.4 2.1 1 23 330 353 330 353 0.98

3 11 0.00075 0.04 13.6 2.7 1 23 395 417 395 417 0.98

4 11 4.9e-07 2.6e-05 23.6 1.5 2 23 474 495 473 495 0.97

5 11 6.2e-05 0.0033 17.0 1.1 1 23 500 523 500 523 0.95

6 11 0.00013 0.0067 16.0 0.3 1 23 561 583 561 583 0.97

7 11 8.5e-07 4.5e-05 22.9 1.7 1 23 593 615 593 615 0.96

8 11 1.9e-06 0.0001 21.7 1.2 1 23 621 643 621 643 0.99

9 11 9.7e-06 0.00051 19.5 0.2 1 23 649 671 649 671 0.98

10 11 3.9e-05 0.0021 17.6 4.5 1 23 677 699 677 699 0.98

11 11 0.0011 0.059 13.1 0.5 1 21 705 725 705 726 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.4e-05	0.0034	16.9	1.6	2	23	301	322	300	322	0.97
2	11	2.2e-05	0.0012	18.4	2.1	1	23	330	353	330	353	0.98
3	11	0.00075	0.04	13.6	2.7	1	23	395	417	395	417	0.98
4	11	4.9e-07	2.6e-05	23.6	1.5	2	23	474	495	473	495	0.97
5	11	6.2e-05	0.0033	17.0	1.1	1	23	500	523	500	523	0.95
6	11	0.00013	0.0067	16.0	0.3	1	23	561	583	561	583	0.97
7	11	8.5e-07	4.5e-05	22.9	1.7	1	23	593	615	593	615	0.96
8	11	1.9e-06	0.0001	21.7	1.2	1	23	621	643	621	643	0.99
9	11	9.7e-06	0.00051	19.5	0.2	1	23	649	671	649	671	0.98
10	11	3.9e-05	0.0021	17.6	4.5	1	23	677	699	677	699	0.98
11	11	0.0011	0.059	13.1	0.5	1	21	705	725	705	726	0.94

Sequence Information

Coding Sequence: ATGGCAGTTCCGAGCGATGACGCGATGAATAACATAGCACGCGTGGAACAGCTCGTGGGCGACGAATGCCGCATCTGTCTCAAGTCCTGCACGGAGGCGTGCCAGCTCTTCCTCAACGACAGCGGGATACCAGAGAAATTGATGGCCATTGCCGCTGTACAGGTGGAGGTAGGGGATGGTCTGCCAGCTTACATCTGTTCAGCTTGCAATGATTTGCTCGATGTGTCCTATGACTTCAGGTGCCAGATTCAGAACGCCGACGAAAGACTACGGCAGTTTCTAAAGTTGCAGATTCAACCTATGCTGCATGACAAACATTCGAAAGATAGCATGATAATCAAAGATATCGCGGATGTCATATCTGATGTAGTATCTTGTAAAAAAGGTAATCATATAGAGCAAGGTATTTCCTCGTCTCACGATATTGTTGCGTTTAATAATACTGTCGTTCAATCTGATATGATAATTGATGAATCTCACATAAGTCATAAGATACAAAAGACAACAGAAATTATAGAATCAAGTGAAAAAGATGCACTGTATGGTACAGTTAAAGATAATGTACATAATGCTGAAATGATAGAAGTAGCCTTGTGTCATGAGGCACACATGGATGATGCAGTTGCCGATCATTCAGATCGATTTTCCAGTTCAACAACGGAAGACAGATGTATCAAACAAGAAGATTTAATACTACCTGAAGACAATGAGACATTGGGAAATTTAACAGATGAAAATAGGgaagatacattaaaaattgaagctAAAAATGATGCATTGCTAGAAAATTTCAATGATCACATTTCGAAAGAAACTATGGTGTCAGAAATGGATACGAAAAGTGTCACAAATTGTAGTGATGACGAGGAGAAACCGCTTATAAGCAGGACAACGAGACAGAAGTGCTTGCATTGCATCAAATCGTTTGCAACAAAAGTTGCATTACAGCGACACATGAACGTACACAAACACAAGACAAAGCTACGTTACGTGTGCGTCGTATGCGACAAGCAGTTCTCGAATATCAACAAATTGAAGAATCACATGCTCACGTGTCACGAGACTCAAACGGCAGATAATAAAACGTCACAAGATGACAAAAAGGTAAATAAAGTGTCGGCGAAACTTACTAGAAGTGGCACTGTGGCGGACAGCATAagggaagaaaagaaaaatttcaagtttacATGCAAAGTCTGCtcgaaacaatttatatatcagaAATCCTTTTTGTCTCATGCCAAAAGTCATGTTGAATACAACGTGGATACATCGTACGTGGATGACGTACTTGACCAATCTGCGAATGATACAACGAGTGAACAAAAAGATAGAATGCCAATATTCAGAGAAAATGAATCcgaggaggaagaagaagaagaggatgACGATGACAATGATTTACCGATCAAAAGTCTGCAGTGTACTCAGTGCGGCAAACTTTTTGCTACAAAAAGAAACTTGAAAAGGCATATCTCGACGCACAGTGGCTTGAAGTTTAATTGTTCGACATGTGGTAAAGGATTTTCGAGAATCGACAAGCTGAAAGATCACGAACAATCGAAACACAAAGAGGAAATATTCGGCAACACTGATGATGAAGATGATTACGAGGAGGATAACGAGAGCAAAATCAACGAGAATTCCGAAAACCGAAAGAAGgaCCGACACAATAGGCCACATAAATGCATGCTTTGTCCAAAGGCCTTCGCACAGGCTCAATCTCTGGCAAACCACGTAGAGAGGCATAAACGAGTGAAGGACACACAGAAACGATTTCTCTGCGAGAAATGTAGCAAGTGCTTTGCTCAGAGTGGATCGCTGGTGGCGCATATGCGTACACATACCGGCATCAAGCCATATGTATGCAACGTATGCAGTCGTGCCTTCACCAAGAGCACGTATTTACAGTTGCATCTGAGAACTCATAGCGGTGAGAAACCGTATATCTGCCAGTATTGTAGTAGAGCGTTTGCCCGGGCTAATACTCTGGCACGGCACATCACCATGCATACTGGTGAGGCCAAATATCATTGTAACATCTGCACCAAGTCCTTCCGACGATTGACCTCATTGAACGAACACACGTATACACATACCGGTCAACGACCGTACGCATGCAAGCTCTGTACTAAAAGATACAACAATGCCGGCTCGTTATATGCTCATACGAAGAAATGCAAGGCGCAGCAATTGTCCAATTCGACAACATCTGCATATGCAGTGTCCATGGCAGATAATGCGCCGCAACAGAACGACGCGTCTATGCCTCTACTAATATATTCTCCGAGGAAATTAGTAGAAGAAGCGGCTGTTGGTCAAGTTGTATCCACGCCACAATATATGGTAACAAATGTGCACAATCAAAAAACAGTGCCGCCCAACGTGATCCAACCGTACGCCGTAGAGGATCCAAATGTGTACAATTCAAAACAGTTTAAGAACTCGTATTATGCTATTTATCCAAATATGCAATAA
Protein Sequence: MAVPSDDAMNNIARVEQLVGDECRICLKSCTEACQLFLNDSGIPEKLMAIAAVQVEVGDGLPAYICSACNDLLDVSYDFRCQIQNADERLRQFLKLQIQPMLHDKHSKDSMIIKDIADVISDVVSCKKGNHIEQGISSSHDIVAFNNTVVQSDMIIDESHISHKIQKTTEIIESSEKDALYGTVKDNVHNAEMIEVALCHEAHMDDAVADHSDRFSSSTTEDRCIKQEDLILPEDNETLGNLTDENREDTLKIEAKNDALLENFNDHISKETMVSEMDTKSVTNCSDDEEKPLISRTTRQKCLHCIKSFATKVALQRHMNVHKHKTKLRYVCVVCDKQFSNINKLKNHMLTCHETQTADNKTSQDDKKVNKVSAKLTRSGTVADSIREEKKNFKFTCKVCSKQFIYQKSFLSHAKSHVEYNVDTSYVDDVLDQSANDTTSEQKDRMPIFRENESEEEEEEEDDDDNDLPIKSLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRIDKLKDHEQSKHKEEIFGNTDDEDDYEEDNESKINENSENRKKDRHNRPHKCMLCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNICTKSFRRLTSLNEHTYTHTGQRPYACKLCTKRYNNAGSLYAHTKKCKAQQLSNSTTSAYAVSMADNAPQQNDASMPLLIYSPRKLVEEAAVGQVVSTPQYMVTNVHNQKTVPPNVIQPYAVEDPNVYNSKQFKNSYYAIYPNMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01476429;
90% Identity: iTF_01477803;
80% Identity: -