Basic Information

Insect: Atta cephalotes
Gene Symbol: -
Assembly: GCA_000143395.2
Location: NW:7075466-7079275[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6e-05 0.0035 16.9 1.6 2 23 301 322 300 322 0.97

2 11 2.1e-05 0.0012 18.4 2.1 1 23 330 353 330 353 0.98

3 11 0.0007 0.04 13.6 2.7 1 23 395 417 395 417 0.98

4 11 4.6e-07 2.6e-05 23.6 1.5 2 23 472 493 471 493 0.97

5 11 5.8e-05 0.0034 17.0 1.1 1 23 498 521 498 521 0.95

6 11 0.00012 0.0068 16.0 0.3 1 23 559 581 559 581 0.97

7 11 7.9e-07 4.6e-05 22.9 1.7 1 23 591 613 591 613 0.96

8 11 1.8e-06 0.0001 21.7 1.2 1 23 619 641 619 641 0.99

9 11 9e-06 0.00052 19.5 0.2 1 23 647 669 647 669 0.98

10 11 3.7e-05 0.0021 17.6 4.5 1 23 675 697 675 697 0.98

11 11 0.001 0.06 13.1 0.5 1 21 703 723 703 724 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6e-05	0.0035	16.9	1.6	2	23	301	322	300	322	0.97
2	11	2.1e-05	0.0012	18.4	2.1	1	23	330	353	330	353	0.98
3	11	0.0007	0.04	13.6	2.7	1	23	395	417	395	417	0.98
4	11	4.6e-07	2.6e-05	23.6	1.5	2	23	472	493	471	493	0.97
5	11	5.8e-05	0.0034	17.0	1.1	1	23	498	521	498	521	0.95
6	11	0.00012	0.0068	16.0	0.3	1	23	559	581	559	581	0.97
7	11	7.9e-07	4.6e-05	22.9	1.7	1	23	591	613	591	613	0.96
8	11	1.8e-06	0.0001	21.7	1.2	1	23	619	641	619	641	0.99
9	11	9e-06	0.00052	19.5	0.2	1	23	647	669	647	669	0.98
10	11	3.7e-05	0.0021	17.6	4.5	1	23	675	697	675	697	0.98
11	11	0.001	0.06	13.1	0.5	1	21	703	723	703	724	0.94

Sequence Information

Coding Sequence: ATGGCAGTTCCGAGCGATGACGCGATGAATAACATAGCACGCGTGGAACAGCTCGTGGGCGACGAATGCCGCATCTGTCTCAAGTCCTGCACGGAGGCGTGCCAGCTCTTCCTCAACGACAGCGGGATACCAGAGAAATTGATGGCCATCGCCGCTGTACAGGTGGAGGTAGGGGATGGTCTGCCAGCTTACATCTGTTCAGCTTGCAATGATTTGCTCGATGTGTCCTATGACTTCAGGTGCCAGATTCAGAACGCCGACGAGAGGCTACGGCAGTTTCTAAAGTTGCAGATTCAACCTATGCTGCATGACAAACATTCGAAAGATAGCATGATAATCAAAGATATCGCGGATGTCATATCTGATGTAGTATCTTGTAAAAAAGGTAATCATATAGAGCAAGGTATTTCCTCGTCTCACGATATTGTTGCGTTTAATAATACTGTCGTTCAATCTGATATGATAATTGATGAATCTCACATAAGTCATAAGATACAAAAGACAACAGAAATTATAGAATCAAGTGAAAAAGATGCACTGTATGGTACAGTTAAAGATAATGTACATAATGCTGAAATGATAGAAGTAGCCTTGTGTCATGAGGCACACATGGATGATGCAGTTGCCGATCATTCAGATCAATTTTCCAGTTCAACAACAGAAGACAGATGTATCAAACAAGAAGATTTAATACTACCTGAAGATAATGAGACATTGGGAAATTTAACAGATGAAAATAGGgaagatacattaaaaattgaagctAAAAATGATGCATTGCTAGAAAATTTCAATGATCACATTTCGAAAGAAACTATGGTGTCAGAAATGGATACGAAAAGTGTCACAAATTGTAGTGATGACGAGGAGAAACCGCTTATAAGCAGGACAACGAGACAGAAGTGCTTGCATTGCATCAAATCGTTTGCAACAAAAGTTGCATTGCAGCGACACATGAACGTACACAAACACAAGACAAAGCTACGTTACGTGTGCGTCGTATGCGACAAGCAGTTCTCGAATATCAACAAATTGAAGAATCACATGCTCACGTGTCACGAGACTCAAACGGCAGATAATAAAACGTCACAAGATGACAAAAAGGTAAATAAAGTGTCGGCGAAACTTACTAGAAGTGGCACCGTGGCGGACAGCATAagggaagaaaagaaaaatttcaagtttacATGCAAAGTCTGCtcgaaacaatttatatatcagaAATCCTTTTTATCTCATGCCAAAAGTCATGTTGAATACAACGTGGATACATCGGATGACGTATTTGAGCAATCTGCGAATGATACAACGAGTGAACAAAAAGATAGAATGCCAATATTCAGAGAAAATGAATCcgaggaggaagaagaagaagaggatgACGATGACAATGATTTACCGATCAAAAGTCTGCAGTGTACTCAGTGCGGCAAACTTTTTGCTACAAAAAGAAACTTGAAAAGGCATATCTCGACGCACAGTGGCTTGAAGTTTAATTGTTCGACATGTGGTAAAGGATTTTCGAGAATCGACAAGCTGAAGGATCACGAACAATCGAAACACAAAGAGGAAATATTCGGCAACACTGATGATGAAGATGATTATGAGGAGGATAACGAGAGCAAAATCAACGAGAATTCCGAAAACCGAAAGAAGgaCCGACACAATAGGCCACATAAATGCATGCTTTGTCCAAAGGCCTTCGCACAGGCTCAATCTCTGGCAAACCACGTAGAGAGGCATAAACGAGTGAAGGACACACAGAAACGATTTCTCTGCGAGAAATGTAGCAAGTGCTTTGCTCAGAGTGGATCGCTGGTGGCGCATATGCGTACACATACCGGCATCAAGCCATATGTATGCAACGTATGCAGTCGTGCCTTCACCAAGAGCACGTATTTACAGTTGCATCTGAGAACTCATAGCGGTGAGAAACCGTATATCTGCCAGTATTGTAGTAGAGCGTTTGCCCGGGCTAATACTCTGGCACGGCACATCACCATGCATACTGGTGAGGCCAAATATCATTGTAACATCTGCACCAAGTCCTTCCGACGATTGACCTCATTGAACGAACACACGTATACACATACCGGTCAACGACCGTACGCATGCAAGCTCTGTACTAAAAGATACAACAATGCCGGCTCGTTATATGCTCATACGAAGAAATGCAAGGCGCAGCAATTGTCCAATTCGACAACATCTGCATATGCAGTGTCCACGGCAGATAATGCGCCGCAACAGAACGACACGTCTATGCCTCTACTAATATATTCTCCGAGGAAATTAGTAGAAGAAGCGGCTGTTGGTCAAGTTGTATCCACGCCACAATATATGGTAACAAATGTGCACAATCAAAAAACAGTGCCGCCCAACGTGATCCAACCGTATGCCGTAGAGGATCCGAATGTGTACAATTCAAAACAGTTTAAGAACTCGTATTATGCTATTTATCCAAATATGCAATAA
Protein Sequence: MAVPSDDAMNNIARVEQLVGDECRICLKSCTEACQLFLNDSGIPEKLMAIAAVQVEVGDGLPAYICSACNDLLDVSYDFRCQIQNADERLRQFLKLQIQPMLHDKHSKDSMIIKDIADVISDVVSCKKGNHIEQGISSSHDIVAFNNTVVQSDMIIDESHISHKIQKTTEIIESSEKDALYGTVKDNVHNAEMIEVALCHEAHMDDAVADHSDQFSSSTTEDRCIKQEDLILPEDNETLGNLTDENREDTLKIEAKNDALLENFNDHISKETMVSEMDTKSVTNCSDDEEKPLISRTTRQKCLHCIKSFATKVALQRHMNVHKHKTKLRYVCVVCDKQFSNINKLKNHMLTCHETQTADNKTSQDDKKVNKVSAKLTRSGTVADSIREEKKNFKFTCKVCSKQFIYQKSFLSHAKSHVEYNVDTSDDVFEQSANDTTSEQKDRMPIFRENESEEEEEEEDDDDNDLPIKSLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRIDKLKDHEQSKHKEEIFGNTDDEDDYEEDNESKINENSENRKKDRHNRPHKCMLCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNICTKSFRRLTSLNEHTYTHTGQRPYACKLCTKRYNNAGSLYAHTKKCKAQQLSNSTTSAYAVSTADNAPQQNDTSMPLLIYSPRKLVEEAAVGQVVSTPQYMVTNVHNQKTVPPNVIQPYAVEDPNVYNSKQFKNSYYAIYPNMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01476429;
90% Identity: iTF_01477803;
80% Identity: -