Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.12 2.6e+02 1.7 0.3 15 44 96 122 88 122 0.82

2 6 0.041 93 3.2 4.5 6 38 116 145 111 150 0.82

3 6 9.2e-07 0.0021 18.1 2.3 1 39 140 174 140 181 0.91

4 6 0.00073 1.7 8.8 0.2 13 39 179 202 175 209 0.87

5 6 9.1e-06 0.021 14.9 2.0 1 41 196 232 196 234 0.91

6 6 3.3e-05 0.075 13.1 1.0 2 40 225 259 224 262 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.12	2.6e+02	1.7	0.3	15	44	96	122	88	122	0.82
2	6	0.041	93	3.2	4.5	6	38	116	145	111	150	0.82
3	6	9.2e-07	0.0021	18.1	2.3	1	39	140	174	140	181	0.91
4	6	0.00073	1.7	8.8	0.2	13	39	179	202	175	209	0.87
5	6	9.1e-06	0.021	14.9	2.0	1	41	196	232	196	234	0.91
6	6	3.3e-05	0.075	13.1	1.0	2	40	225	259	224	262	0.88

Coding Sequence: ATGCAATCGGACAATAATCCAATGACAAATGATCATCGTAAAATTCCTCcggaaataatgaatttgaacGCTTCGTTGTGGATGGATAACCATATGATGATTATGCCAGAAgtaGtattaaatgaagaaaaaaaagacaaatgcGATAGTTACCCAACCATCAACACATCTATAATTCTGCAACCAGTAGAACTCTTCGCGACATCAAAAACACTCGAGCTTCCGAAAGagtctcaaatttttgaccatCATCTTTCCACTCCTAACAAAATCAAACCGATCAACGAGCAAGTATCATGTACATggtgtaaaattgaattcgcCGATAAGAATGTCTTACTCGACCATATCAAACAAAACCATCGAGTTGATCGTGTTCACAAGTGTCTCGAATgctcaaaaatattcacgCAGAAATCAAACTTGAAAGCGCATTACAGATTGCATACGGGAGAAAAACCATTCAAGTGCACATATTGCTCGAAAACATTCGCACAAAAGTCAAATTTGATCAATCATTTATCTGTACACACACGAGATAAACCATTCGAGTGTCCTATTTGTAAGCGAGCTTTTTCTCAGAGATCTAACCTAAAAAGTCATATATTTATTCATACAGGAGAAAAACCGTATAAATGTAACATTTGTAGTAAagaatttgtacaaaaatccAATCTCGTCAGTCATGTCAGAACACATACTGCAGAAAAACCTCATCGATGTGATATCTGCGATAAATACTTTAGTCAGCGTTCCAATTTAATTAGTCATTTGAAATTACATGCGAAGGTAACCCCTACGTAA
Protein Sequence: MQSDNNPMTNDHRKIPPEIMNLNASLWMDNHMMIMPEVVLNEEKKDKCDSYPTINTSIILQPVELFATSKTLELPKESQIFDHHLSTPNKIKPINEQVSCTWCKIEFADKNVLLDHIKQNHRVDRVHKCLECSKIFTQKSNLKAHYRLHTGEKPFKCTYCSKTFAQKSNLINHLSVHTRDKPFECPICKRAFSQRSNLKSHIFIHTGEKPYKCNICSKEFVQKSNLVSHVRTHTAEKPHRCDICDKYFSQRSNLISHLKLHAKVTPT

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00194657; iTF_01262817; iTF_01262756; iTF_01264068; iTF_01472836; iTF_01263021; iTF_01150670; iTF_01263854; iTF_00725775; iTF_01150895; iTF_01263791; iTF_01150617; iTF_00725722; iTF_01472638;
90% Identity: iTF_00194657; iTF_01262817; iTF_01262756; iTF_01264068; iTF_01472836; iTF_01263021; iTF_01150670; iTF_01263854; iTF_00725775; iTF_01150895; iTF_01263791; iTF_01150617; iTF_00725722; iTF_01472638;
80% Identity: iTF_01472836; iTF_01472638;