Pvib002555.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000017.1:1583429-1584296[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.019 1.6e+02 3.0 0.1 26 51 127 152 121 153 0.85 2 5 0.0021 17 6.1 0.0 21 51 150 180 146 181 0.87 3 5 9.6e-05 0.8 10.3 0.1 22 44 179 201 174 209 0.87 4 5 0.028 2.4e+02 2.4 0.0 21 44 206 229 202 234 0.88 5 5 0.0001 0.87 10.2 0.2 21 47 234 260 229 266 0.88
Sequence Information
- Coding Sequence
- ATGCAGTCGAATACTCCAATGACAAACGATCACCGTAAACTCTCCACCGAAATAATGAATCTGAACGCTTCATTATGGATGGATAATCACATGATGATTATGCCAGAAGTAGTATTGAACGAAGACAAAAAAGACAAATGCGATAGTTACCCAGCCATCAACACATCGATAATTCTACAACCAGTAGAACTATTCGCACCGTCGAAAACACTCGAGCTTCCCAAAGAGACTCAAATTTTCGACCACCATCTCTCCGATCCTGACAAACTGAAACCCATCGGCGGGCCAGTATCTTGTACCTggtgtaaaattgaatttgctGATAAGAACGTCCTACTCGACCATATTAAACAGAACCATCGAGTCGATCGAGTTCACAAATGCCACCATTGTTCTAAAATATTTACGCAGAAATCGAATCTAAAAGCCCATTACAGATTGCACACGGGCGAGAAACCATTTAAATGCACATATTGCACGAAAACGTTTGCTCAGAAGAGTAACCTGATAAATCATCTTTCCGTGCATACTCGAGATAAACCATTCGAGTGCCCTATTTGTAAGCGAGCTTTCTCTCAGAGATCTAATTTGAAAAGTCATATATTCACACATACCGGCGAAAAACCCTACAAATGTAATATGTGCAGTAAAGAATTCGTACAGAAATCAAATCTCGTCAGTCATGTGAGAACACATACGGCTGAAAAACCTCACCGATGTGATatttgcgataaatattttaGTCAGCGTTCCAATTTAATTAGTCATTTGAAATTACACGCCAAAGTTAACCCTACGtag
- Protein Sequence
- MQSNTPMTNDHRKLSTEIMNLNASLWMDNHMMIMPEVVLNEDKKDKCDSYPAINTSIILQPVELFAPSKTLELPKETQIFDHHLSDPDKLKPIGGPVSCTWCKIEFADKNVLLDHIKQNHRVDRVHKCHHCSKIFTQKSNLKAHYRLHTGEKPFKCTYCTKTFAQKSNLINHLSVHTRDKPFECPICKRAFSQRSNLKSHIFTHTGEKPYKCNMCSKEFVQKSNLVSHVRTHTAEKPHRCDICDKYFSQRSNLISHLKLHAKVNPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01472612;
- 90% Identity
- iTF_01472612;
- 80% Identity
- iTF_01263854; iTF_01263791;