Tman006700.1
Basic Information
- Insect
- Trabutina mannipara
- Gene Symbol
- -
- Assembly
- GCA_900080175.1
- Location
- FKYK01012174.1:1632-2511[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.038 2.3e+02 2.0 0.0 27 51 129 153 121 154 0.83 2 5 0.0025 15 5.8 0.0 21 51 151 181 149 182 0.87 3 5 6.3e-05 0.38 10.9 0.1 22 46 180 204 175 210 0.84 4 5 0.0068 41 4.4 0.0 21 44 207 230 203 234 0.89 5 5 0.00013 0.77 10.0 0.2 21 47 235 261 230 266 0.89
Sequence Information
- Coding Sequence
- ATGCAATCGGACAATAATCCAATGACAAATGATCATCGTAAAATTCCTCcggaaataatgaatttgaacGCTTCGTTGTGGATGGATAACCATATGATGATTATGCCAGAAgtaGtattaaatgaagaaaaaaaagacaaatgcGATAGTTACCCAACCATCAACACATCTATAATTCTGCAACCAGTAGAACTCTTCGCGACATCAAAAACACTCGAGCTTCCGAAAGagtctcaaatttttgaccatCATCTTTCCACTCCTAACAAAATCAAACCGATCAACGAGCAAGTATCATGTACATggtgtaaaattgaattcgcCGATAAGAATGTCTTACTCGACCATATCAAACAAAACCATCGAGTTGATCGTGTTCACAAGTGTCTCGAATgctcaaaaatattcacgCAGAAATCAAACTTGAAAGCGCATTACAGATTGCATACGGGAGAAAAACCATTCAAGTGCACATATTGCTCGAAAACATTCGCACAAAAGTCAAATTTGATCAATCATTTATCTGTACACACACGAGATAAACCATTCGAGTGTCCTATTTGTAAGCGAGCTTTTTCTCAGAGATCTAACCTAAAAAGTCATATATTTATTCATACAGGAGAAAAACCGTATAAATGTAACATTTGTAGTAAagaatttgtacaaaaatccAATCTCGTCAGTCATGTCAGAACACATACTGCAGAAAAACCTCATCGATGTGATATCTGCGATAAATACTTTAGTCAGCGTTCCAATTTAATTAGTCATTTGAAATTACATGCGAAGGTAACCCCTACGTAA
- Protein Sequence
- MQSDNNPMTNDHRKIPPEIMNLNASLWMDNHMMIMPEVVLNEEKKDKCDSYPTINTSIILQPVELFATSKTLELPKESQIFDHHLSTPNKIKPINEQVSCTWCKIEFADKNVLLDHIKQNHRVDRVHKCLECSKIFTQKSNLKAHYRLHTGEKPFKCTYCSKTFAQKSNLINHLSVHTRDKPFECPICKRAFSQRSNLKSHIFIHTGEKPYKCNICSKEFVQKSNLVSHVRTHTAEKPHRCDICDKYFSQRSNLISHLKLHAKVTPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01472612;
- 90% Identity
- iTF_01472612;
- 80% Identity
- iTF_01472612;