Tger012786.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- bab1
- Assembly
- GCA_900474355.1
- Location
- UCWB01000632.1:3251-10389[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-17 2.7e-14 53.5 0.0 1 43 50 93 50 95 0.95 2 2 2.3 3.1e+03 -1.2 0.6 6 15 172 181 168 183 0.87
Sequence Information
- Coding Sequence
- ATGTTTTTTTCCCGGCTTTTCGGGGGGGCTGTTCCAGCAGACAGCTACCAGTATCAGCTGCAATCCATGTGGCAGAAGTGCTGGAACACCAATCAAAGCCTCGTGCACAATCTGCGCTTTCGTGAGCGCGGACCACTCAAGTCCTGGCGGCCCGAGACGATGGCCGAGGCGATCTTCAGCGTGCTGAAGGAGGGACTCTCGCTCAGCCAGGCTGCTAGGAAATACGATATTCCATACCCGACGTTCGTACTTTACGCGAACCGAGTCCACAACATGCTCGGGCCGAGCGCCGACGGTGGAGCCGATCTGCGGCCAAAGGGCCGGGGGAGGCCGCAAAGGATCCTCCTCGGCGTCTGGCCGGACGAGCACATCCGCGGCGTGATTCGCGCGGTGGTCTTCCGCGACGGGCACTCGCCCCACATAGTCAAGGAGGAGCCGACCACCATGTATCCAGCCCTTGCGAATTACGGCGCCTGCAATGGACCCGAGGGAGCGGTCAGCCCCagcgcggccgccgccgcggtcgccgccgtcgctcaagGTCTCCGCCACCAGATGTGCAGCATGGTAGCCGCGGCCCACTCGCAGCAACACGACATGCTGGCGACGAATCTCTCGACGAGCCTCTCGTCCAATCTCTCATCCAATCTCTCCTCCAACCTCTCCTCCAATCTCCAAGCGGCCATGCAGCAAGCCActcaacagcagcaacagcaacagcagcagcaacagcagcagcaacaacagcaacagcagcagcaccaccatcaacagcagcagcaacagcaacaacagcaacaacagcaccagcagcatcatcaccagcagcagcatccgcaccaccaccaccacaacaacaacaacaacggcagCGGTGGCGGTGGAATGAGCCTCAGCAGCATGATGTCGGGCGCCGGTACGCCGGGCCACAGCAACAACGGCAACTCGCCGCTGAACCTCGGCCTCGCCAGTCCCGGCTCAGCTGGCCCACCCGAGAGTCCCATGGAATCACCTCTAGCCTCGCCCCTTGGCTCCCTCATGGATCCATCACATCTGCCGCCCAGCGTGGAGGTCGGCATCGGCGTCAGCGGCATGACGTACAAGCCGGCGCGCAGCTACGTCAGCCCCCGACCCGAGAATCTCTTCCAGGAGGACCTCTCCGACCTTGTAAAGAGCTCGCACGCGGCTCtcaaggagaaggagaagatcGCCGTCAAACTCGAGCCCCTGACGGACTCGAGATGCGAATAG
- Protein Sequence
- MFFSRLFGGAVPADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTMYPALANYGACNGPEGAVSPSAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMLATNLSTSLSSNLSSNLSSNLSSNLQAAMQQATQQQQQQQQQQQQQQQQQQQQHHHQQQQQQQQQQQQHQQHHHQQQHPHHHHHNNNNNGSGGGGMSLSSMMSGAGTPGHSNNGNSPLNLGLASPGSAGPPESPMESPLASPLGSLMDPSHLPPSVEVGIGVSGMTYKPARSYVSPRPENLFQEDLSDLVKSSHAALKEKEKIAVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00690083; iTF_01469574; iTF_00079756; iTF_01466093; iTF_01035342; iTF_01036117; iTF_00286243; iTF_00309423; iTF_00691844; iTF_00692815; iTF_00708466; iTF_00714290; iTF_00734487; iTF_01219000; iTF_00707778; iTF_01464953; iTF_00691003; iTF_00969488; iTF_00326296; iTF_01111675; iTF_01110024; iTF_01112495; iTF_01110854; iTF_01380520; iTF_01113329; iTF_01381238;
- 90% Identity
- iTF_01469574; iTF_01466093; iTF_01464953;
- 80% Identity
- -