Pnir047739.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- bab1
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010004118.1:11099-15655[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-18 4.4e-14 53.8 0.0 1 43 28 71 28 73 0.95 2 2 0.47 4.5e+03 -0.7 0.5 6 15 152 161 148 164 0.87
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGCTGGAACACCAATCAGAGCCTAGTGCACAATCTTCGCTTTCGAGAACGCGGCCCTTTGAAGTCCTGGCGTCCGGAAACGATGGCGGAAGCGATTTTTAGCGTACTCAAGGAAGGCCTCTCATTGAGCCAGGCTGCAAGgaAATACGATATTCCATACCCGACGTTCGTACTTTACGCGAACCGAGTCCATAACATGCTCGGACCGAGCGCCGATGGTGGAGCCGGTAAGTATCTGCGGCCGAAGGGCCGGGGGAGGCCGCAGAGGATCCTCCTCGGCGTCTGGCCGGACGAGCACATCCGCGGCGTGATCCGAGCGGTGGTCTTCCGCGACGGGCACTCGCCCCACATGGTCAAGGAGGAGCCGACCACCATGTACCCCGCCCTGGCGAATTACGGCGCCTGCAACGGACCCGAGGGAGCGGTCAGCCCTAGCGCGGCTGCTGCCGCAGTTGCCGCCGTCGCTCAAGGCCTCCGACACCAGATGTGCAGCATGGTGGCCGCAGCCCACTCGCAGCAGCACGACATGCTGGCGACGAACCTCTCGACGAGCCTCTCGTCCAACCTCTCCTCGAACCTCCAGGCGGCGATGCAGCAGGCgagccagcagcagcagcagcaccagcagcaccagcagcaccaccaccaccaccacaaCAACAACGGGGGCGGCGGGGGCATGGGCCCGGGCGCGGGAACGCCCGGCctcggcggcggcagcggcggggGCGGCAACAGCAACCACGGCAACTCGCCCCTCAACCTCGGGCTCGCGAGCCCCGGCTCGGGCGGGCCCCCCGAGAGCCCCATGGAGTCGCCCCTGGCCAGTCCGCTCGGCTCGCTCATGGACCCCTCGCACCTGCCGCCGAGCGTCGAGGTCGGCATCGGCGTCAGCGGCATGACCTACAAGCCCGCGCGCAGCTTCGTCAGCCCCCGACCAGAGACTCTCTTCCAGGAGGACATCTCCGACCTCGTCAAGAGCTCGCACGCCGCCCTCAAGGAGAAGGAGAAGATCGCCGTCAAACTGGAGCCGCTCACGGATTCGCGATGCGAATAG
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGKYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHMVKEEPTTMYPALANYGACNGPEGAVSPSAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMLATNLSTSLSSNLSSNLQAAMQQASQQQQQHQQHQQHHHHHHNNNGGGGGMGPGAGTPGLGGGSGGGGNSNHGNSPLNLGLASPGSGGPPESPMESPLASPLGSLMDPSHLPPSVEVGIGVSGMTYKPARSFVSPRPETLFQEDISDLVKSSHAALKEKEKIAVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01467006;
- 90% Identity
- iTF_00690083; iTF_00079756; iTF_01523951; iTF_00708466; iTF_01428181;
- 80% Identity
- -