Csis016528.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- bab1
- Assembly
- GCA_949987625.1
- Location
- OX465095.1:79359557-79373522[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 3.9e-14 53.4 0.0 1 43 87 130 87 132 0.95 2 2 1.4 4.5e+03 -1.3 0.6 6 15 209 218 205 220 0.87
Sequence Information
- Coding Sequence
- ATGTGGAAAAATCTTTGGATTCTATTTGGAAACCGTTCAGATTTTCTTGCTTCTAATTGGGGTATTATTAAGCATTCTGTCCAGATCCCAGCCAAGTTGTTGGAATCGTCTCACGCTTGGCTCGGAGCCTCCACCTCCAGCATAGCAGCAGACAGCTATCAGTATCAATTGCAGTCTATGTGGCAAAAATGTTGGAATACCAATCAAAGCCTGGTGCACAATCTGCGCTTTCGAGAACGCGGACCTTTAAAATCTTGGCGGCCGGAAACAATGGCGGAAGCAATTTTTAGCGTACTCAAAGAAGGCCTTTCGTTGAGCCAGGCTGCTAGgAAATACGATATTCCATACCCGACGTTCGTACTTTACGCAAATCGAGTTCATAACATGCTCGGACCGAGCGCCGACGGTGGAGCCGATCTGCGGCCAAAGGGCCGGGGGAGGCCTCAGAGGATCCTGCTCGGCGTCTGGCCGGACGAACACATTCGCGGCGTGATTCGAGCGGTGGTCTTCCGCGACGGACACTCACCCCACATGGTAAAGGAAGAACCGACCAGCATGTATCCCGCCTTGGCGAATTACGGCGCCTGCAACGGACCCGAGGGAGCGGTCAGCCCCAGCGCAGCTGCCGCCGCGGTCGCCGCCGTCGCTCAAGGCTTACGACATCAGATGTGCAGTATGGTAGCCGCAGCTCACTCCCAGCAACACGACATGCTAGCGACGAATCTGTCAACGAGCCTCTCGTCGAATCTCTCGTCCAACCTTCAAGCGGCGATGCAGCAGGCGAgccaacaacaacaacaacagcagcagcaacaccaGCAAcaccagcagcaacaacagcaccAGCACCATCAGCAGCACCACCAACAGCACCAGCAGCATCACCATCACCATCATCaccacaacaacaacaacgccggcagcggtggcggtggcggcggcggcggcggcagcggcatgATTTCGGGCGCGGGAACGCCCGGCCTCGGTGGCGGCAACAGCAACAACGGCAACTCACCCTTGAATCTCGGGCTCGCGAGTCCGAGCTCCGGCGGCCCACCCGAGAGCCCGATGGAGTCACCTCTGGCCAGTCCGCTCGGCTCGCTCATGGACCCCTCGCACCTCCCTCCGAGCGTCGAAGTCGGCATCGGCGTCAGCGGCATGACTTACAAGCCCGCGCGCAGCTTTGTCAGCCCCAGGCCCGAGAATCTCTTCCAGGAGGACATCTCCGAACTCGTGAAAAGCTCGCACGCGGCCTTGAAGGAAAAGGAGAAAATCGCCGTTAAACTCGAGCCGCTCACGGACTCCCGATGCGAATAG
- Protein Sequence
- MWKNLWILFGNRSDFLASNWGIIKHSVQIPAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHMVKEEPTSMYPALANYGACNGPEGAVSPSAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMLATNLSTSLSSNLSSNLQAAMQQASQQQQQQQQQHQQHQQQQQHQHHQQHHQQHQQHHHHHHHHNNNNAGSGGGGGGGGGSGMISGAGTPGLGGGNSNNGNSPLNLGLASPSSGGPPESPMESPLASPLGSLMDPSHLPPSVEVGIGVSGMTYKPARSFVSPRPENLFQEDISELVKSSHAALKEKEKIAVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01467006;
- 90% Identity
- iTF_01380520;
- 80% Identity
- -