Opom014735.1
Basic Information
- Insect
- Ormyrus pomaceus
- Gene Symbol
- bab1
- Assembly
- GCA_900474385.1
- Location
- UCOM01000490.1:6557-13780[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-17 1.8e-14 53.5 0.0 1 43 74 117 74 119 0.95 2 2 1.7 2.1e+03 -1.2 0.6 6 15 196 205 192 207 0.87
Sequence Information
- Coding Sequence
- ATGAGGCGCGAGCACGTTTGTCTTCCCTCATCCGGCGACGACGAGAGCGACCGAGAGCAGACGTCGGAAAGCGCCTTACGACTTGCGGACGCTTTAGAATATAACTTACCAGATAGCTATCAGTATCAATTGCAATCCATGTGGCAAAAGTGCTGGAATACCAATCAGAGCCTGGTTCACAATCTTCGCTTTCGGGAACGCGGCCCTTTGAAGTCCTGGCGGCCGGAAACGATGGCTGAAGCGATTTTCAGTGTACTCAAGGAAGGCCTTTCATTGAGCCAAGCAGCAaggaaATATGATATTCCGTATCCGACGTTCGTACTTTACGCGAACCGAGTCCATAACATGCTCGGACCGAGCGCCGACGGTGGAGCCGATCTGCGGCCAAAGGGTCGGGGGAGGCCTCAGAGGATCCTGCTCGGCGTCTGGCCGGACGAGCACATCCGCGGCGTGATTCGAGCGGTGGTCTTCCGCGACGGACACTCGCCCCACATGGTCAAGGAGGAGCCGACCACGATGTATCCCGCCTTGGCGAATTACGGCGCCTGCAACGGACCCGAGGGAGCAGTCAGCCCCAGcgcagctgccgccgcggtcgccgccgtcgctcaAGGTCTCCGACACCAGATGTGCAGCATGGTGGCAGCGGCCCACTCGCAGCAGCACGACATGCTGGCCACGAATCTCTCGACCAGCCTCTCCTCGAACCTGTCCTCGAACCTGCAGGCGGCGATGCAGCAGGCGAgccagcaacagcagcagcagcagcagcaacaacaacagcagcaacagcaacagcagcagcatcaccaccagcagcagcagcaccaccaTCATCACCAtcacaacaacaacaacaacagcggCATGCTCTCGGGTGCGGGAACGCCCGGCCTCGGCGGCCCCGGCAGCAACCACGGCAACTCGCCGCTGAACCTCGGCCTCGCCAGCCCGGGCTCGGGCGGCCCCCCCGAGAGCCCCATGGAGTCCCCGCTCGCCAGTCCTCTGGGCTCGCTCATGGATCCCTCGCACCTGCCGTCCTCCGTCGAGGTCGGCATCGGCGTCAGCGGCATGACCTACAAGCCGGCCCGCAGCTTCGTCAGCCCCCGGCCCGAGAACCTCTTCCAGGAAGACATTTCCGAGCTGGTTAAGAGCTCGCACGCCGCCCTCAAGGAGAAGGAGAAGATTGCCGTCAAACTCGAGCCGCTGACCGACTCGCGATGCGAATAG
- Protein Sequence
- MRREHVCLPSSGDDESDREQTSESALRLADALEYNLPDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHMVKEEPTTMYPALANYGACNGPEGAVSPSAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMLATNLSTSLSSNLSSNLQAAMQQASQQQQQQQQQQQQQQQQQQQHHHQQQQHHHHHHHNNNNNSGMLSGAGTPGLGGPGSNHGNSPLNLGLASPGSGGPPESPMESPLASPLGSLMDPSHLPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDISELVKSSHAALKEKEKIAVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01467006;
- 90% Identity
- iTF_01380520;
- 80% Identity
- iTF_01110024;