Tpel002956.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411253.1:1488898-1493311[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-08 2e-05 24.2 0.0 1 43 19 61 19 62 0.95 2 2 4.8 3.5e+03 -2.2 0.0 14 22 143 150 138 150 0.76
Sequence Information
- Coding Sequence
- atgcctcgcaagtataaacgaaagccaggtgtggtgccgcgccacatcaactggacagaagatagtttagcacttgcgttcgaagatctaaataaaaaacaaaaaagtatcaacgaaatatcccggatttatggcatatcctctcgaaccttaagaagacggtacgaacagagaaatcaactactggtaacacaaggaaaataccctgtccttggctttgaaaatgaaaaaagactagtatctcatacactaaagctcgcagaggcaggatttcctcctgaaaggagtctaattcgccaattagcctatcagtttgccgaaaaactaggattgaagcacaattttaataatgaaactaaaatggctggaccgcaatggttgaaaagtttccttgaaagaaatcccgaaatagttgtgaggcaagctgagggcttgtcaattcaaagagcgaagggtctaagcagggtcgaagtagccaaattttttgatcttctcataaccgtcttaactgaaaatgatttgctagataagccggacagaattttcaatatggatgaaagcggtgtccaactcaacaataaacctggcaaggtattagccaagaaaggtactagagcagtgaaatcacttacttccggtgaaaaaggcgaaacaattaccgttgttgcttgttgcaacgctatcggcaattttctcccacctgttttgattatcaagggggtaaataaaaagccagaatttgaagaaggacttcctcctgggtccaaagtttatatgcaaaagaaatcggcatatatttcctctgaacttttttacaagtggttgactgaacattttataccacgcaagcctcccggaaaggtattactaattttagatggtcattcatcacattctagtgctgtcaacatgctggaaactgctcgtgacaatgatgtgatactgctttgtttaccTAGTCATACTACTTCTGCTTTACAACCTTTAGACGTATCTGTATTCGGACCCTTTAAAAAATACTATTATGCGGAGACAAACAATTTTATTCGCACCAATCCACAAAAAAAACTGAACCGGTACAATTCTGGTCAACTGATAGCAAGGGCTTGGATTCGAGCAACTACATCTGCTAATGCAATAAGTGGTTTTCGCGGCAGCGGAATCTATCCAGTCAATCCAAATGCACTGTCTGATGCTGAATTTGCTATATCAGATATTGCATTAGGGGAGCTTACGCAGGAACAAGAGTCTGAAACTATAAACGATCAAGTACTAGGTGCTTCTGGAGAACTTGCGTTACGTGTGCGCATTCAGGAATCTGAATATGACCGCGGTAATGTACTAAGTCGACAGAATGAAGTGACTCTACTAGGCGATCAAGTCCCAAGCTACTGTGATAAAAATAATCCAGAAACGATTGTAAATGAAGCTGAGCAGAATAGCGTGAACCAAAGTTGCACGCCACCTAGGCCGTCCTTGAGTCTTTTGGCTCTTTCTCATGAATGTTTAGCCCTTGAAGATGGCGAAATTGAAAATTATATTTTAGATAATACTGAACTATCATTGCCATCGCTGATATCTTTAAATGAGTCACAGAACAAGGATCTACAAAAAGAAACACCGTCGAAATTTTTACATCAATCATCTCCTATACCAAAAATTCCGCTGAGTATGTCTAAAAGGGCTAAACAATCAGCCGAAGTTTTAAACTCGAATGATAAAATAATCGAGAAGAAGAATAAAACTGAGAGAGTAAAGAAAACAATCATAATGAAACAAATGGAAGAAACAAAAACCAATCCAGTTGGTAGCAAAGAAAAGATTACGAAGAAAAGAGAGCGACCACAAAAAAATAAAAAATCAAAACAATATAGAGATGTTACCagcaTACTAAATACAAACATGAAGAATCAATATAAGCGTCTCGTCATAGACGCGTCACGATCGATAACAAATACGGAAAACGTATCAATGTGTTATACGCAGTAA
- Protein Sequence
- MPRKYKRKPGVVPRHINWTEDSLALAFEDLNKKQKSINEISRIYGISSRTLRRRYEQRNQLLVTQGKYPVLGFENEKRLVSHTLKLAEAGFPPERSLIRQLAYQFAEKLGLKHNFNNETKMAGPQWLKSFLERNPEIVVRQAEGLSIQRAKGLSRVEVAKFFDLLITVLTENDLLDKPDRIFNMDESGVQLNNKPGKVLAKKGTRAVKSLTSGEKGETITVVACCNAIGNFLPPVLIIKGVNKKPEFEEGLPPGSKVYMQKKSAYISSELFYKWLTEHFIPRKPPGKVLLILDGHSSHSSAVNMLETARDNDVILLCLPSHTTSALQPLDVSVFGPFKKYYYAETNNFIRTNPQKKLNRYNSGQLIARAWIRATTSANAISGFRGSGIYPVNPNALSDAEFAISDIALGELTQEQESETINDQVLGASGELALRVRIQESEYDRGNVLSRQNEVTLLGDQVPSYCDKNNPETIVNEAEQNSVNQSCTPPRPSLSLLALSHECLALEDGEIENYILDNTELSLPSLISLNESQNKDLQKETPSKFLHQSSPIPKIPLSMSKRAKQSAEVLNSNDKIIEKKNKTERVKKTIIMKQMEETKTNPVGSKEKITKKRERPQKNKKSKQYRDVTSILNTNMKNQYKRLVIDASRSITNTENVSMCYTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01451396;
- 90% Identity
- iTF_01451395; iTF_01451397; iTF_01451398; iTF_01451400; iTF_00071379; iTF_00072751; iTF_00407526; iTF_00820016; iTF_00782578; iTF_00038707; iTF_01246825; iTF_00038706; iTF_00710960; iTF_00801779;
- 80% Identity
- -