Cpun014306.1
Basic Information
- Insect
- Cyclophora punctaria
- Gene Symbol
- -
- Assembly
- GCA_951394245.1
- Location
- OX596184.1:5351535-5355045[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-07 0.00017 21.6 0.0 1 43 19 61 19 62 0.92 2 2 8.3 4e+03 -2.0 0.0 14 22 143 150 138 150 0.75
Sequence Information
- Coding Sequence
- ATGCCTCGCAAGTATAAACGAAAGCCAGGCGTGGTGCCACGCCACATCAACTGGACAGAAGATAGTTTAGTACTTGCGTTCGaagaactaaataaaaaacaaaaaagtatcaACGAAATATCCCGAATTTACGGCATATCCTCTCGAACCTTAAGAAGACGGTATGAAAAGAGAAACCAGCTATTGGTGACCCAAGGAAAATATCCTGTCCTTGgctttgaaaatgaaaaaagacTAGTATCATATATACTAAAGCTCGGAGACGCAGGATTTCCTCCTGAAAGGAGTTTAATTCGCCAATTAGCCTATCAATTTGCCGAAAAACTAGGATTGAagcacaattttaataatgaaactCAAACGGCTGGACAACAATGGTTAAGAAGCTTTCTTGAAAGAAATCCCGAAATAGTTGTGAGACAAGCTGAGGGCTTATCAATCCAAAGAGCGAAGGGTCTAAGCAGGACCGAAGTAGCCAAATTTTTTGATCTGCTCATAACCGTCTTAACTAATAATGGTTTGCTGGATAAGCCGGAGCGAATTTTTAATATGGATGAAAGCGGTGTCCAACTCAACAATAAACCTGGCAAGGTATTAGCCAAGAAAGGTACGAGAGTAGTGAAATCACTTACTTCCAGTGAAAAAGGCGAAACCATTACTGTTGTTGCTTGTTGCAACGCTATCGGCAATTttctcccacctgttctgatTATCAAGGGGGTAAATAAAAAGCCAGAATTTGAAGAAGGACTTCCTCCTGGTTCCAAAGTTTATATGCAAAAGAAATCAGCATATATTTCCTCAGAACTTTTTTACAAGTGGCTAACTGAACATTTTATACCCCGCAAGCCTCCAGGAAAGGTATTACTAATTTTAGATGGTCATTCATCACATTGCAGTGCTGTGGATATGCTGGAAACTTCTCGTGAAAATGATGTGATACTGCTTTGTTTACCCAGTCATACTACTTCTGCATTACAACCTTTAGACGTATCTGTATTCGgaccatttaaaaaatactattatgcggagacaaacaattttattcgCACCAATccacaaaaaaaacttaaccgGTACAATTCTGGTCAACTGATAGCAAGGGCGTGGATTCGAGCAACTACACCTGCCAATGCAATAAGTGGTTTTCGCCGCAGTGGAATCTACCCAGTCAATCCAAATGCTCTGTCTGATGCTGAATTTACTATATCAGATATTGCATTGGGGGAGCTTACGCAGGAACAAGAGGCTAATACTATAAACGATCCAGTACCAGGCCCTTCTGGAGAACTTGCGTTACGTGAGCGCATACAGGAATCTGAATATGACCAAGTTAATGTACCAAGTCGACAAAACGAAGTGACTCTTCAAGGCGATGAAATCCCAAGCTACTGTGATGAAAATAATCCAGAAACTATCGTAAATGAAGCTGAGCAGAATAGCGAGAACCAAAATTACACGCCACCTAGGCCGTCCTCGAGTCTTTTGGCTCTTTCTCATGATTGTTTAGCCCTAGGAGATGGCGAAAttgaaaattacattttagatAATACTGAACTATCATTGCCTTCgcttatatctttaaatgAGTCACAGAACAAAGATCTGCAAAAAGAAACACCATCGAAATTTTTACATCAATCATCTCCTATACCAAAAATTCCGCTGACTTGGGCAGTATACAATGCAATGGCAATTATACCAAAAAAAACTTAG
- Protein Sequence
- MPRKYKRKPGVVPRHINWTEDSLVLAFEELNKKQKSINEISRIYGISSRTLRRRYEKRNQLLVTQGKYPVLGFENEKRLVSYILKLGDAGFPPERSLIRQLAYQFAEKLGLKHNFNNETQTAGQQWLRSFLERNPEIVVRQAEGLSIQRAKGLSRTEVAKFFDLLITVLTNNGLLDKPERIFNMDESGVQLNNKPGKVLAKKGTRVVKSLTSSEKGETITVVACCNAIGNFLPPVLIIKGVNKKPEFEEGLPPGSKVYMQKKSAYISSELFYKWLTEHFIPRKPPGKVLLILDGHSSHCSAVDMLETSRENDVILLCLPSHTTSALQPLDVSVFGPFKKYYYAETNNFIRTNPQKKLNRYNSGQLIARAWIRATTPANAISGFRRSGIYPVNPNALSDAEFTISDIALGELTQEQEANTINDPVPGPSGELALRERIQESEYDQVNVPSRQNEVTLQGDEIPSYCDENNPETIVNEAEQNSENQNYTPPRPSSSLLALSHDCLALGDGEIENYILDNTELSLPSLISLNESQNKDLQKETPSKFLHQSSPIPKIPLTWAVYNAMAIIPKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01016602;
- 90% Identity
- iTF_01451399;
- 80% Identity
- -