Hsem008689.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000047.1:1368409-1370828[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-07 5.1e-05 23.2 0.0 1 43 19 61 19 62 0.94
Sequence Information
- Coding Sequence
- ATGCCTCGCAAGTATAAACGAAAGTCAGGCGTGGTGCCGCGCCACATCAACTGGACAGAAGATAGTTTAGCACTTGCGTTCGaagaactaaataaaaaacaaaaaagtatcaACGAAATATCCCGGATTTATGGCATATCCTCTCGAACCTTAAGAAGACGGTATGAAAAGAGAAACCAGCTACTGGTAACCCAAGgaAAATACCCGGTCCTTggctttgaaaatgaaaaaagacTAGTATCCCATATACTGAAGCTCGGAGACGCAGGATTTCCTCCTGAAAAGAGTTTAATTCGCCAATTAGCCTATCAGTTTGCCGAAAAACTAGGATTGAAGCacaattttaataatgaaactAAGATGGCTGGACCGCAATGGTTGAAAAGTTTCCTTGAAAGAAATCCCGAAATAGTTGTGAGGCAAGCTGAGGGCTTATCAATTCAAAGAGCGAAGGGTCTAAGCAGGGCCGAAGTAGCCAAATTTTTTGATCTGCTCATAACCGTCTTAACTGATAATGATTTACTGGATAAGCCGGAGCGAATTTTCAATATGGATGAATGCGGTGTCCAACTCAACAATAAACCTGGCAAGGTATTAGCCAAGAAAGGTACTAGAGCAGTGAAATCACTAACTTCCGGTGAAAAAGGTGAAACAATTACCGTTATTGCTTGTTGCAGCGCTATCGGCAATTTTCTCCCACCTGTTCTGATTATCAAGGGGGTAAATAAAAAGCCAGAATTTGAAGAAGGACTTCCTCTTGGTTCCAAAGTTTATATGCAAAAGAAATCAGCATATATTTCCTCAGAACTTTTTTACAAGTGGCTGACTGAACATTTTATACCCCACAAGCCTCCAAGAAAGACGTATCTGTATTCGGACcgtttaaaaaatactattatgcGGAGACAAACAATTTTATTCGCACCAatccacaaaaaaaaactgaaccgGTACAACTCTGGTCAACTGATAGCAAGGGCGTGGATTCGAGCAACTACACCTGCCAATGCAATAAGTGGTTTTCGCGGCAGCGGAATCTATCCAGTCAATCCAAATGCTCTGTCTGATGCTGAATTTGCTATATCAGATATTGCATTGGAGGAGCTTACGCAGGAACAAGAGTCTGAAACTATAAATGATCAAGTACCAGGCGCTTCTGGAGAACTAGCGTTACGTGAGCGCATACAGGAATCTGAATATGACCGAGGTAATGTACTAAGTCGACAGAACGAAGTGACTCTACAAGACGATCAAGTCCCAAGCTACTGTGATAAACATAATCCAGGAACTATCGTAAATGAAACTGAGAAGAATAGCGTGAACCAAAATTACACGCCACCTAGGCCGTCCTCGAGTCTTTTGGCTCTTTCTCATGATTGTTTAGCCCTAGGAGATGGCGAAattgaaaattacattttaGATAATACTGAACTATCATTACCATCGCTGATATCTTTAAATGAGTCACAGAACAAAGATCTACAAAAAGAAACACCATCGAAATTTTTACATCAATCATCTCCTATACCAAAAATTCCGCTGAGTATGTCTAAAAGGGCTAAACAATCAGCAGAAATTTTAAACTCGAATGATAAAATAATCGAGAAGAAGAATAAAACTGAAAAAGCAAAGGAAAGAAGCATAATGAAACAAACGAAAGAAACAAAAACCAAACCAGTTGaatgttttgaaaattataaattaactaaatcGAAATCAGATTGGATTAAATGTGACATGTGTCGAATGTGGTTGCATGAAACTTGTACAACATTCAAAAACCATTGCCTGAGATGTGGCAAGTTGAAAACCTTGGCTTCTGGTGATAATCAATGCTAA
- Protein Sequence
- MPRKYKRKSGVVPRHINWTEDSLALAFEELNKKQKSINEISRIYGISSRTLRRRYEKRNQLLVTQGKYPVLGFENEKRLVSHILKLGDAGFPPEKSLIRQLAYQFAEKLGLKHNFNNETKMAGPQWLKSFLERNPEIVVRQAEGLSIQRAKGLSRAEVAKFFDLLITVLTDNDLLDKPERIFNMDECGVQLNNKPGKVLAKKGTRAVKSLTSGEKGETITVIACCSAIGNFLPPVLIIKGVNKKPEFEEGLPLGSKVYMQKKSAYISSELFYKWLTEHFIPHKPPRKTYLYSDRLKNTIMRRQTILFAPIHKKKLNRYNSGQLIARAWIRATTPANAISGFRGSGIYPVNPNALSDAEFAISDIALEELTQEQESETINDQVPGASGELALRERIQESEYDRGNVLSRQNEVTLQDDQVPSYCDKHNPGTIVNETEKNSVNQNYTPPRPSSSLLALSHDCLALGDGEIENYILDNTELSLPSLISLNESQNKDLQKETPSKFLHQSSPIPKIPLSMSKRAKQSAEILNSNDKIIEKKNKTEKAKERSIMKQTKETKTKPVECFENYKLTKSKSDWIKCDMCRMWLHETCTTFKNHCLRCGKLKTLASGDNQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01451396;
- 90% Identity
- iTF_01451399;
- 80% Identity
- -