Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000003.1:33850516-33853800[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0023 0.45 12.9 2.1 1 23 107 130 107 131 0.97

2 19 0.16 32 7.0 0.6 1 23 160 182 160 182 0.97

3 19 1.6e-06 0.00031 22.8 3.7 1 23 188 210 188 210 0.98

4 19 3.5e-05 0.0068 18.6 0.7 1 23 213 235 213 235 0.98

5 19 0.0041 0.79 12.1 0.7 1 23 604 626 604 626 0.96

6 19 4.2e-06 0.00081 21.5 0.8 1 23 634 656 634 656 0.97

7 19 0.75 1.4e+02 5.0 1.2 2 23 664 686 663 686 0.95

8 19 0.00077 0.15 14.4 0.3 2 23 719 741 718 741 0.96

9 19 1.1e-05 0.0021 20.2 3.3 1 23 754 776 754 776 0.99

10 19 0.58 1.1e+02 5.3 0.0 9 23 791 806 784 806 0.91

11 19 3 5.8e+02 3.1 2.5 1 23 810 832 810 832 0.94

12 19 0.00025 0.049 15.9 0.2 3 23 840 861 839 861 0.97

13 19 0.016 3 10.3 5.1 3 23 866 886 865 886 0.97

14 19 0.00032 0.061 15.6 0.5 3 23 896 916 894 916 0.95

15 19 0.17 32 7.0 0.1 1 23 922 944 922 944 0.97

16 19 4.3e-06 0.00083 21.5 1.2 1 23 950 972 950 972 0.97

17 19 9.7e-06 0.0019 20.3 2.8 1 23 978 1001 978 1001 0.98

18 19 2e-05 0.0039 19.3 2.4 1 23 1007 1029 1007 1029 0.97

19 19 0.00047 0.091 15.0 1.7 1 23 1035 1058 1035 1058 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0023	0.45	12.9	2.1	1	23	107	130	107	131	0.97
2	19	0.16	32	7.0	0.6	1	23	160	182	160	182	0.97
3	19	1.6e-06	0.00031	22.8	3.7	1	23	188	210	188	210	0.98
4	19	3.5e-05	0.0068	18.6	0.7	1	23	213	235	213	235	0.98
5	19	0.0041	0.79	12.1	0.7	1	23	604	626	604	626	0.96
6	19	4.2e-06	0.00081	21.5	0.8	1	23	634	656	634	656	0.97
7	19	0.75	1.4e+02	5.0	1.2	2	23	664	686	663	686	0.95
8	19	0.00077	0.15	14.4	0.3	2	23	719	741	718	741	0.96
9	19	1.1e-05	0.0021	20.2	3.3	1	23	754	776	754	776	0.99
10	19	0.58	1.1e+02	5.3	0.0	9	23	791	806	784	806	0.91
11	19	3	5.8e+02	3.1	2.5	1	23	810	832	810	832	0.94
12	19	0.00025	0.049	15.9	0.2	3	23	840	861	839	861	0.97
13	19	0.016	3	10.3	5.1	3	23	866	886	865	886	0.97
14	19	0.00032	0.061	15.6	0.5	3	23	896	916	894	916	0.95
15	19	0.17	32	7.0	0.1	1	23	922	944	922	944	0.97
16	19	4.3e-06	0.00083	21.5	1.2	1	23	950	972	950	972	0.97
17	19	9.7e-06	0.0019	20.3	2.8	1	23	978	1001	978	1001	0.98
18	19	2e-05	0.0039	19.3	2.4	1	23	1007	1029	1007	1029	0.97
19	19	0.00047	0.091	15.0	1.7	1	23	1035	1058	1035	1058	0.95

Sequence Information

Coding Sequence: ATGCTTGTGTTTCAGGTGACACACATACCTGCATCACCACCTGAGAACCTTGTGGACCTCACGGGGTCCTCCAGTCAGTCCGACATCAAAATAGAGAGAGTCATGTCGATGGTCACCGACAATACTAATACAAACTCGAGGGATAAAGTTGCCAAGAGCACCCTGGGAGCCTCTAACAAGCAGAACACCGCCATGACCTTGGACGTGGACGTGTCCGACCCGGACGCGACAATGTACCGCTGCACCTCGTGTAGATATAAGACCCTCCACATGCTCTCGTTTGTGCAGCACCTCAAGACACACCCCAAGAAGACTTACTACAAGTGTTCAGAGTGTTCACAGCAGTTTGAGAAGCGGAGCGACGCCCAACAACACATTACAACTGTCCACCACTGCAGTGATGTTGAGTTTGACGACGACACCTCCGCACCCGTCAAGAAAGTCCCAGAGGCACCCCCGGCCCAGAAAAGAAAGGTGTTTGAGTGTGACATCTGCAGCTACCGCGACACAGACAGAGACCAGTTTGACAAACACTTGTTGTCTCACACCCAACCAACATTTTACGAGTGCAGCATTTGTTCTAAGAGATTTAAAAGCAAGCAGTACCTGCAGAAGCACATGAAGAATCATAAGATATACAAATGTGGGATCTGCGGTTTAACATTCAGGGTGAAGCTGAACCTTCTAAAACACTTCAAGGTTCACAAGAGTGATGAGCCAGCCGAGGATCCTCCTATGGAGGAGACCACATCATCCTCGCTGGTtgaggagaaggaagaggagaAGGAAAACATGGAGCAGGAGGAGGCATCAACACCAAAACGTTTGAAGCTTCATGAAGATTACGACCGGGTGGAGCAGATGCTGGAAATGATGCATTCCGGCGCCTCTGTGCTTGAAGACCAGGAGCCGAAACAGACTGATGGTGATACTATGGAGCAATCTGGTGTCGAAGACTCTGTGATGGATAGTCAAGATGATGTGGACAAAGTTGTAGAGAGTATCTCGGAACACTTGAACGGTGAGAAAGAGGAAGAAAACTTGGATGCTGGAGAAAGTTTGGTCGAGCACGAACCGAAGACGGTCGATGACTCTCTAGAAAGTGCTGAAGAACGTGTTGAAGACGAGAAAGAGGAGGATAGCTCAGATGATCAAACTGTTACTGAGAAAAGATTTGTTAGCTTGGAAGAAGTGAAAAATATTGCAGACAGTTTTGACAGTTTGGATGACGTGGCTGAGAGCTCTGAGTTGATCCACCAGGGTGATCAAGAtggtttgaatgacaaactagAAAATGGCACCATCAAATTGGAGGAACCAAAGATGGAACTGGATGTTGATGTGAATAAAGAGGCAGACAAGATAGTAAGTGAAGCTCTTGGAGTGGATTTGAATGAATATATCAGTAATGACATGAACATGGACATTAGTGCATCGTCTGACAAACCAGAGGAGAACAGCCTGCCCTCGCTAGTGTCTGAAAACTCTGGGTCACTACCAGAAATGGACGATAACACAAGGGAGGAGGCCATAGAGAAGGACCACCTCACAGATGTCAATGAACCAATTACAGGTATGACACAATCACCAGTTATTAATGCTAGTCAGGAAATGAAGTCAGAACTAGTTGACAATATGTTTGATGAACTTTTCTGGCACTGTCCTACTGAGTCATCTTTACCATTTCAGGTTGATGCCGACGGCCCTGCCCCGGATTTTGAGGTGGAGACACATGGAACTGGTCTTCCGTCTCTCTCCACCGCCGCAGAGCAACACACTCCGAACCTGGccaccgcaaaaaaaaaagtttaccttTGTTCGGTGTGTGGGCTGAGGTCACGCTCAGAAAATCAGATCCGGAGGCATCTAAGGAGCCACATCGCGCTGAGGAAGAAAAGTTTCGTATGCCGTGTATGCAGCAAGATTTTCACCACCCAGGGTAACTTGACCCGTCATTTAGTCAAACATTCACCTGAGAACATGAGTGTCCCATGTGACGTGTGTGATGGTTTATTCCATGATAGGCTTCACTTAAAAGAACACACGGATACCACCCACTCGGGAAGGCACAAGTGCTCGTTTTGCAATACTATATTAACTAGCAGGAAAGCTCGCTGGTTTCACGAGAAGACTCATCCTGAGCGGCTCGTGCAAAAGTGTGACGATTGCGGAGAGTTATTTGAAACCAAGGTGAAACTCAAGATTCACAAGGAGACCGTCCATGCTGATGCCACGTTTGAGCTCACAGAGGGTAAGATCTACAAGTGCCACCTATGTGGTAAGATTGTATCAACATACTTCAACCTCAGGAGGCACCTGCAGAGTCATAAGGGTGATGTAGGGCAGACTAATTGCAACATAGGCCTCACAGGGTTTAAAGACAGCTCGCTCCTGCAGCTGCACCTCATAACTATGCACCCCAATAACTATCACTGTCCGTTCTGCCTTCTAGTGTTTCCCAGTAAGCAACTGTGTAAGATTCATGAGGCAACCCATCCTGAGAAGCTATCCCACGGGTGCGTTGATTGTGGCAAGCGCTTTGCGACGGCTGAGCGACTAGAACGGCACAAACAAGTGATGCATCGAGACCCCCACTGCAAGTACTGTGGGAGGTGCTATGGAGATATGAAAAAGTTGTTTGCTCATGAGCGTCGGCACGAGAGGTACAAAAAGATGTCTTTGGACTGTACACAATGCGATAAAACATTTAAGACCCCCACAGGACTCAAGTTCCACATGGCTGTGCACACGGGAGAATACGCATTCTACTGCGAGATATGTGGCCAAGGCAGGCATTCTGAGGTGGTTCTTGCGGAGCACATGGCAACTCACACTAAAGAGATCCGTTACATTTGTGACTATTGCGGTAAGAAGTTCTCTTCCAACAGCACCTACCGGATACATCGCCTCTGGCACGAGAACCCCTTTCCTTATAAATGCACCACATGTGGGAAGAGCTTCAAACACACGTCGGTACTTGCTGTCCATAGACGACGGGTGCACACAGGTGAGCGCCCTCACAAGTGCCCTTATTGCCCATTATCGTTCACTGTGTCAAGCACATTACACAAGCACATTATCCTACACACTCAGCAGTTCCCTCACAACTGTACTTCCTGTGGGAAGGGGTACACTACTAGGACTAAGTTGGCTCGCCATCTTGCCAAGGTTCACAACGACAACGAAATGCTCAACAATCTTGGTCACCACTATGAGTACAAGATGGCACTGCAGCCCAGTGAGGTCTCACCCTCGGTGGAACTACTTGAACGCTCTGGGAAGTGA
Protein Sequence: MLVFQVTHIPASPPENLVDLTGSSSQSDIKIERVMSMVTDNTNTNSRDKVAKSTLGASNKQNTAMTLDVDVSDPDATMYRCTSCRYKTLHMLSFVQHLKTHPKKTYYKCSECSQQFEKRSDAQQHITTVHHCSDVEFDDDTSAPVKKVPEAPPAQKRKVFECDICSYRDTDRDQFDKHLLSHTQPTFYECSICSKRFKSKQYLQKHMKNHKIYKCGICGLTFRVKLNLLKHFKVHKSDEPAEDPPMEETTSSSLVEEKEEEKENMEQEEASTPKRLKLHEDYDRVEQMLEMMHSGASVLEDQEPKQTDGDTMEQSGVEDSVMDSQDDVDKVVESISEHLNGEKEEENLDAGESLVEHEPKTVDDSLESAEERVEDEKEEDSSDDQTVTEKRFVSLEEVKNIADSFDSLDDVAESSELIHQGDQDGLNDKLENGTIKLEEPKMELDVDVNKEADKIVSEALGVDLNEYISNDMNMDISASSDKPEENSLPSLVSENSGSLPEMDDNTREEAIEKDHLTDVNEPITGMTQSPVINASQEMKSELVDNMFDELFWHCPTESSLPFQVDADGPAPDFEVETHGTGLPSLSTAAEQHTPNLATAKKKVYLCSVCGLRSRSENQIRRHLRSHIALRKKSFVCRVCSKIFTTQGNLTRHLVKHSPENMSVPCDVCDGLFHDRLHLKEHTDTTHSGRHKCSFCNTILTSRKARWFHEKTHPERLVQKCDDCGELFETKVKLKIHKETVHADATFELTEGKIYKCHLCGKIVSTYFNLRRHLQSHKGDVGQTNCNIGLTGFKDSSLLQLHLITMHPNNYHCPFCLLVFPSKQLCKIHEATHPEKLSHGCVDCGKRFATAERLERHKQVMHRDPHCKYCGRCYGDMKKLFAHERRHERYKKMSLDCTQCDKTFKTPTGLKFHMAVHTGEYAFYCEICGQGRHSEVVLAEHMATHTKEIRYICDYCGKKFSSNSTYRIHRLWHENPFPYKCTTCGKSFKHTSVLAVHRRRVHTGERPHKCPYCPLSFTVSSTLHKHIILHTQQFPHNCTSCGKGYTTRTKLARHLAKVHNDNEMLNNLGHHYEYKMALQPSEVSPSVELLERSGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447774; iTF_01450821; iTF_01446857; iTF_01448814; iTF_01445018;
90% Identity: iTF_01445018;
80% Identity: -