Basic Information

Insect: Timema bartmani
Gene Symbol: SCRT1
Assembly: GCA_902151455.1
Location: CABFWB010001199.1:73503-83241[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.003 0.67 12.7 2.1 1 23 240 263 240 264 0.97

2 19 0.21 48 6.9 0.6 1 23 293 315 293 315 0.97

3 19 2.1e-06 0.00046 22.6 3.7 1 23 321 343 321 343 0.98

4 19 4.5e-05 0.01 18.4 0.7 1 23 346 368 346 368 0.98

5 19 0.0053 1.2 11.9 0.7 1 23 732 754 732 754 0.96

6 19 5.7e-07 0.00013 24.4 0.5 1 23 762 784 762 784 0.97

7 19 0.89 2e+02 4.9 1.7 2 23 792 814 791 814 0.95

8 19 6.1e-05 0.014 18.0 0.3 2 23 847 869 846 869 0.96

9 19 1.4e-05 0.0032 20.0 3.3 1 23 882 904 882 904 0.99

10 19 0.058 13 8.6 0.2 3 23 913 934 911 934 0.96

11 19 3.9 8.7e+02 2.9 2.5 1 23 938 960 938 960 0.94

12 19 0.00085 0.19 14.4 0.2 3 23 968 989 967 989 0.97

13 19 0.02 4.5 10.1 5.1 3 23 994 1014 993 1014 0.97

14 19 0.00041 0.092 15.4 0.5 3 23 1024 1044 1022 1044 0.95

15 19 0.22 49 6.8 0.1 1 23 1050 1072 1050 1072 0.97

16 19 5.5e-06 0.0012 21.3 1.2 1 23 1078 1100 1078 1100 0.97

17 19 0.00011 0.024 17.2 3.1 1 23 1106 1129 1106 1129 0.98

18 19 3.8e-06 0.00084 21.8 1.1 1 23 1135 1157 1135 1157 0.97

19 19 0.00061 0.14 14.9 1.7 1 23 1163 1186 1163 1186 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.003	0.67	12.7	2.1	1	23	240	263	240	264	0.97
2	19	0.21	48	6.9	0.6	1	23	293	315	293	315	0.97
3	19	2.1e-06	0.00046	22.6	3.7	1	23	321	343	321	343	0.98
4	19	4.5e-05	0.01	18.4	0.7	1	23	346	368	346	368	0.98
5	19	0.0053	1.2	11.9	0.7	1	23	732	754	732	754	0.96
6	19	5.7e-07	0.00013	24.4	0.5	1	23	762	784	762	784	0.97
7	19	0.89	2e+02	4.9	1.7	2	23	792	814	791	814	0.95
8	19	6.1e-05	0.014	18.0	0.3	2	23	847	869	846	869	0.96
9	19	1.4e-05	0.0032	20.0	3.3	1	23	882	904	882	904	0.99
10	19	0.058	13	8.6	0.2	3	23	913	934	911	934	0.96
11	19	3.9	8.7e+02	2.9	2.5	1	23	938	960	938	960	0.94
12	19	0.00085	0.19	14.4	0.2	3	23	968	989	967	989	0.97
13	19	0.02	4.5	10.1	5.1	3	23	994	1014	993	1014	0.97
14	19	0.00041	0.092	15.4	0.5	3	23	1024	1044	1022	1044	0.95
15	19	0.22	49	6.8	0.1	1	23	1050	1072	1050	1072	0.97
16	19	5.5e-06	0.0012	21.3	1.2	1	23	1078	1100	1078	1100	0.97
17	19	0.00011	0.024	17.2	3.1	1	23	1106	1129	1106	1129	0.98
18	19	3.8e-06	0.00084	21.8	1.1	1	23	1135	1157	1135	1157	0.97
19	19	0.00061	0.14	14.9	1.7	1	23	1163	1186	1163	1186	0.95

Sequence Information

Coding Sequence: ATGAAGACAACAGGAGACGCAAAGAGCAGGCGGGCCTACGAGAAGCCCGCCCCTCGCAAGAAACCTGTTCCTTGTTTTATCTGCGATGAGCCTGTGGAGGGAGAAGGGGTGTCCCTGGTAGTGGGTAACACTCCCTACTCCAACACGAGTTTCCCCGCCAAGATCGGTCAGCTGATGGGCGACGGGTTTATGGTGGTGGTTACTAAAGAGGATGGTCTGTGTCGCCGATGTTCGGCGCTCCTGAACCACCTGGACAAGCTAGAGTTTGACCTGGCCATTGTGAAGAAGGCTCTGACTGGCTACCTCAAGATGAAGTACCAGTTGCTAGACGAGGGGGAGGAAGAGGTGACTCCACCCTCTGACAATACATTGCACAGCTTGCAGTTGCTCGACCAGCTCAATAAGTTCTCAAAGGTGACACACATACCTGCATCACCACCTGAGAACCTTGTGGACCTCACGGGGTCCTCCAGTCAGTCCGACATCAAAATAGAGAGAGTCATGTCGATGGTCACCGACAATACTAATACAAACTCAAGGGATAAAGTTGCCAAGAGCACCCTGGGAGCCTCAAACAGGCAGAACACTGCCATGACCTTGGACGTGGACGTGTCCGACCCGGACGCGACAATGTACCGCTGCACCTCGTGTAGATACAAGACCCTCCACATGCTCTCGTTTGTGCAGCACCTCAAGACACACCCCAAGAAGACTTACTACAAGTGTTCAGAGTGTTCACAGCAGTTTGAGAAGCGGAGCGACGCCCAACAACACATTACAACTGTCCACCACTGCAGTGATGTTGAGTTTGACGACGACACCTCCACACCCGTCAAGAAAGTCCCAGAGGCACCCCCGGCCCAGAAAAGAAAGGTGTTTGAGTGTGACATCTGCAGCTACCGCGACACAGACAGAGACCAGTTTGACAAACACTTGTTGTCTCACACCCAACCAACATTTTATGAGTGCAGCATTTGTTCTAAGAGATTTAAAAGCAAGCAGTACCTGCAGAAGCACATGAAGAATCATAAGATATACAAATGTGGGATCTGCGGTTTAACATTCAGGGTGAAGCTGAACCTTCTAAAACACTTCAAGGTTCACAAGAGTGATGAGCCAGCCGAGGATCCTCCTATGGAGGAGACCACATCATCCTCGCTGGTTGAGGAGAAGGAAAACATGGAGCAGGAGGAGGCATCAACACCAAAACGTTTGAAGCTTCATGAAGATTACGACCGGGTGGAGCAGATGCTGGAAATGATGCATTCCGGTGCCTCTGTGCTTGAAGACCAGGAGCCGAAACAGACTGATGGTGATACTATGGAGCAATCTGGTGTCGAAGACTCTGTGATGGATAGTCAAGAAGATGTGGACAAAGTTGTAGAGAGTATCTCGGAACACTTGAACGGTGAGAAAGAGGAAGAAAACTTGGATGCTGGAGAAAGTTTGGTCGAGCACGAACCGAAGACGGTCGATGACTCTCTAGAAAGTGCCGAAGAACGTGTTGAAGACGAGAAAGAGGAGGATAGCTCAGATGATCAAACTGTTACTGAGAAAAGATTTGTTAGCTTGGAAGAAGTGAAAAATATTGCAGACAGTTTTGACAGTTTGGACGACGTGGCTGAGAGCTCTGAGTTGATCCACCAGGGTGATCAAGAtggtttgaatgacaaactagAAAATGGCACCATCAAATTGGAGGAACCGAAGATGGACCTGGACGTTGATGTGAATAAAGAGGCAGACAAGATAGTAAGTGAAGCTCTTGGAGTGGATTTGAACGAATATATCAGTAATGACATGAACATGGACATTAGTGCATCGTCTGACAAACCAGAGAACAGCCTGCCCTCACTAGTGTCTGAAAACTCTGGGTCACTACCAGAAATGGACGATAACACAAGGGAGGAGGCCATAGAGAAGGACCACCTCACAGATGTCAATGAACCAATTACAGGTATGACACAATCACCAGTTATTAATGCTAGTCAGGAAATGAAGTCAGAACTAGTTGACAATATGTTTGATGAACTTTTCTGGCACTATCCCAATGAGTCATCTTTACCATTTCAGGTTGATGCCGACGGCCCTGCCCCGGATTTTGAGGTGGAGATACATGGAACTGGTCTTCCGTCTCTCTCCACCGCCGCAGAGCAACACACTCCGAACCTGgccaccacaaaaaaaaaagtttacctttGTTCGGTATGTGGGCTGAGGTCACGCTCAGAAAATCAGATCCGGAGGCATCTAAGGAGCCACATCGCGCTGAGGAAGAAAAGTTTCGTATGCCGTGTATGTGGCAAGATTTTCACCACCCAGGGTAACTTGACCCGTCATTTAGTCAAACATTCACCTGAGAACAAGAGTGTCCCATGTGACGTGTGTGATAGTTTATTCCATGATAGACTTCACTTAAAAGAACACACGGATACCACCCACTCGGGAAGACACAAGTGCTCGTTTTGCAATACTATACTAACTAGCAGGAAAGCTCGCTGGTTTCACGAGAAGACTCATCCTGAGCGGCTCGTGCAAAAGTGTGACGATTGCGGAGAGGTATTTGAAACCAAGGTGAAACTCAAGATTCACAAGGAGACCGTCCATGCTGATGCCACGTTTGAGCTCACTGAGGGTAAGATCTACAAGTGCCACCTATGTGGTAAGATTGTATCAACATACTTCAACCTCAGGAGGCACCTGCAGAGTCATAAGGGTGATGTAGGGCAGACTAATTGCAACATATGTCTCACAGGGTTTAAAGACAGCTCGATCCTTCAGCTGCACCTCATAACTATGCACCCTAATAACTACCACTGTCCGTTCTGCCTTCTAGTGTTTCCCAGTAAGCAACTGTGTAAGATTCATGAGGCAACCCATCCTGAGAAGCTATCCCACGGGTGTGTTGATTGTGGCAAGCGCTTTGCGACGACTGAGCGACTAGAACGACACAAACAAGTGATTCATCGAGACCCCCACTGCAAGTACTGTGGGAGGTGCTATGGAGATATGAAAAAGTTGTTTGCCCATGAGCGTCGGCACGAGAGGTACAAAAAGATGTCTTTGGACTGTACACAATGCGATAAAACATTTAAGACCCCCACGGGACTCAAGTTCCACATGGCTGTGCACACGGGAGAATACGCATTCTACTGCGAGATATGTGGCCAAGGCAGGCATTCTGAGGTGGTTCTTGCGGAGCACATGGCAACTCACACTAAAGAGATCCGTTACATTTGTGACTATTGCGGTAAGAAGTTCTCTTCCAACAGCACCTACCGGATACATCGCCTCTGGCACGAGAACCCCTTTCCTTATAAATGCACCACATGTGAGAAGAGCTTCAAACACACGTCAGTACTTGCTGTCCATAGACGACGGGTGCACACAGGTGAGCGCCCTCACAAGTGCCCTTATTGCCCATTATCGTTCACTGTGTCAAGCACATTACGCAAGCACATTATCCTACACACTCAGCAGTTCCCTCACAACTGCACATCCTGTGGGAAGGGGTACACTACTAGGACTAAGTTGGCTCGCCATCTTGCCAAGGTTCACAACGACAACGAAATGCTCAACAATCTTGGTCACCACTATGAGTACAAGATGGCACTGCAGCCCAGTGAGGTCTCACCCTCGGTGGAACTACTTGAACGCTCTGGCAAGTGA
Protein Sequence: MKTTGDAKSRRAYEKPAPRKKPVPCFICDEPVEGEGVSLVVGNTPYSNTSFPAKIGQLMGDGFMVVVTKEDGLCRRCSALLNHLDKLEFDLAIVKKALTGYLKMKYQLLDEGEEEVTPPSDNTLHSLQLLDQLNKFSKVTHIPASPPENLVDLTGSSSQSDIKIERVMSMVTDNTNTNSRDKVAKSTLGASNRQNTAMTLDVDVSDPDATMYRCTSCRYKTLHMLSFVQHLKTHPKKTYYKCSECSQQFEKRSDAQQHITTVHHCSDVEFDDDTSTPVKKVPEAPPAQKRKVFECDICSYRDTDRDQFDKHLLSHTQPTFYECSICSKRFKSKQYLQKHMKNHKIYKCGICGLTFRVKLNLLKHFKVHKSDEPAEDPPMEETTSSSLVEEKENMEQEEASTPKRLKLHEDYDRVEQMLEMMHSGASVLEDQEPKQTDGDTMEQSGVEDSVMDSQEDVDKVVESISEHLNGEKEEENLDAGESLVEHEPKTVDDSLESAEERVEDEKEEDSSDDQTVTEKRFVSLEEVKNIADSFDSLDDVAESSELIHQGDQDGLNDKLENGTIKLEEPKMDLDVDVNKEADKIVSEALGVDLNEYISNDMNMDISASSDKPENSLPSLVSENSGSLPEMDDNTREEAIEKDHLTDVNEPITGMTQSPVINASQEMKSELVDNMFDELFWHYPNESSLPFQVDADGPAPDFEVEIHGTGLPSLSTAAEQHTPNLATTKKKVYLCSVCGLRSRSENQIRRHLRSHIALRKKSFVCRVCGKIFTTQGNLTRHLVKHSPENKSVPCDVCDSLFHDRLHLKEHTDTTHSGRHKCSFCNTILTSRKARWFHEKTHPERLVQKCDDCGEVFETKVKLKIHKETVHADATFELTEGKIYKCHLCGKIVSTYFNLRRHLQSHKGDVGQTNCNICLTGFKDSSILQLHLITMHPNNYHCPFCLLVFPSKQLCKIHEATHPEKLSHGCVDCGKRFATTERLERHKQVIHRDPHCKYCGRCYGDMKKLFAHERRHERYKKMSLDCTQCDKTFKTPTGLKFHMAVHTGEYAFYCEICGQGRHSEVVLAEHMATHTKEIRYICDYCGKKFSSNSTYRIHRLWHENPFPYKCTTCEKSFKHTSVLAVHRRRVHTGERPHKCPYCPLSFTVSSTLRKHIILHTQQFPHNCTSCGKGYTTRTKLARHLAKVHNDNEMLNNLGHHYEYKMALQPSEVSPSVELLERSGK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01449831;
90% Identity: iTF_01449831; iTF_01446857; iTF_01448814; iTF_01447774;
80% Identity: -