Tmon047165.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- mbr-1
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010003605.1:60248-60919[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-12 2.5e-09 38.8 0.0 1 39 15 53 15 61 0.89 2 2 3.8 2.1e+03 0.6 0.1 13 25 55 67 51 67 0.80
Sequence Information
- Coding Sequence
- ATGCCGCGCCATTACGAAAGAAAAACGAATAGGGCGAGTTGGACTGAAGAAAGTATGTCAGGAGCTATACGAGAAGTTTTACAAGGGAAAATGGGTTACAAGAGAGCGTCACAAGCTTATGGTGTTCCCCAGACAACATTGGAGGATAGAATTAGAAAGGCCCGAAAAGAAAGTTTGTCTCCCCAAAAAGCTGCCAAAAAGAGGTTAGGTCGTTATACAACGGTCTTCACTATGGCACAAGAAAATGAACTAGTGGACTACATATTGCGCCTTGAAGAAAGGCTGTTTGGTCTTACCTTGATTGACGTTCGTGAACTAGCGTTTCAGTTAGCAGAAAGCAATAACATTCCGAACTCAttcaataaagagaaaaaaagagcaGGGAAGGATTGGTTATATGGATTTTTAGACAGGCACAAAGAACTCTCATTGAGGAATCCAGAAAAAACATCAATTGCACGTGCAAAGGGCTTCAACCGCGTGTCTGTTGGGAAGTTTTATGATCTCCTAGAATATCttaatgaaaaatacaaattctCTCCAAATGATGTGTATAACGTTGACGAGACAGGCATTATGACTGTGCCTAACAAACCCTCTAGGGTCCTAGCACTACGCGGGAAAAAACAAGTAGGATCTTTGTCATCAGCGGAAAGAGGCACACGCTTGTGA
- Protein Sequence
- MPRHYERKTNRASWTEESMSGAIREVLQGKMGYKRASQAYGVPQTTLEDRIRKARKESLSPQKAAKKRLGRYTTVFTMAQENELVDYILRLEERLFGLTLIDVRELAFQLAESNNIPNSFNKEKKRAGKDWLYGFLDRHKELSLRNPEKTSIARAKGFNRVSVGKFYDLLEYLNEKYKFSPNDVYNVDETGIMTVPNKPSRVLALRGKKQVGSLSSAERGTRL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449408; iTF_01446417; iTF_01450412; iTF_01446423; iTF_01450416;
- 90% Identity
- iTF_01446417;
- 80% Identity
- -