Tpod056520.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- mbr-1_1
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000013.1:47445618-47446364[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-12 2.6e-09 38.5 0.0 1 39 15 53 15 61 0.92 2 2 5.9 1.9e+03 0.5 0.1 13 25 55 67 51 67 0.80
Sequence Information
- Coding Sequence
- ATGCCGCGACATTACGAAAGAAAAACGAATAGGGCGAGTTGGACTGAAGAAAGTATGTCAGGAGCTATACGAGAAGTTTTACAAGGGAAAATGGGTTACAAGAGAGCGTCACAAGCTTATGGTGTTCCCCAGACAACATTGAAGAATAGAATTAGAAAGGCCCGAAAAGAAAGTTTGTCTCCCCAAAAAGCTGCCAAAAAGAGGTTAGGTCGTTATACAACGGTCTTCACTATGGCACAAGAAAATGAACTAGTGGACTACATATTGCGCCTTGAAGAAAGGCTGTTtggtcttaccttgattgacgTTCGTGAACTAGCGTTTCAGTTAGCAGAAAACAATAACATTCCGAATTCATtcaataaagagaaaaaaagagcAGGGAAGGATTGGTTATATGGATTTTTAGACAGGCACAAAGAACTCTCATTGAGGAATCCAGAAAAAACATCAATTGCACGTGCAAAGGGCTTCAACCGCGTGTCTGTTGGGAAGTTTTATGATCTCCTAGAatatcttaatgaaaaatacaaattctCTCCAAATGTGTATAACGTTGACGAGACAGGTTTTATGACTGTGCCTAACAAACCCTCTAGGGTCCTAGCACTACGCGGGAAAAAAACAAGTAGGATCTTTGTCATCAGCGGAAAGAGACACACTTGTGACAGTCGAAGCATGCATGGACGCAGCAGGGAATTTCATGCCGCCTATGTTTGTCTTcctaagaaagaaagaaaatccTAA
- Protein Sequence
- MPRHYERKTNRASWTEESMSGAIREVLQGKMGYKRASQAYGVPQTTLKNRIRKARKESLSPQKAAKKRLGRYTTVFTMAQENELVDYILRLEERLFGLTLIDVRELAFQLAENNNIPNSFNKEKKRAGKDWLYGFLDRHKELSLRNPEKTSIARAKGFNRVSVGKFYDLLEYLNEKYKFSPNVYNVDETGFMTVPNKPSRVLALRGKKTSRIFVISGKRHTCDSRSMHGRSREFHAAYVCLPKKERKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448380;
- 90% Identity
- iTF_01446423; iTF_01450416;
- 80% Identity
- -