Tshe075203.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010069294.1:1-570[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-10 1.5e-07 33.4 0.1 1 38 15 52 15 58 0.92 2 2 0.22 1.5e+02 4.6 0.2 13 25 55 67 48 67 0.80
Sequence Information
- Coding Sequence
- ATGCCGAGCCATTACGAAAGAAAAACGAACAGAGCGAGTTGGACTGAAGAAAGTATGTCAGGAGCTATACGAGAAGTTTTACAAGAGAAAATGGGTTACAAGAGAGCGTCACAAGCTTATGGTGTTCCCCAGACCACATTGGAGGATATAATTAGAAAGGCCCGAAAAGAAAGTTTGTCTCTCCAAAAAGCTGCCAAAAAGAGGTTAGGTCGTTATACAACGGTCTTCACTATGGCACCAGAAAATGAACTAGTGGACTACATATTGTGCCTTGAAGAAAGGCTGTTTGGTCTTACCTTGATTGACGTTCGTGAACTAGCGTTTCAGTTAGCAGAAAGCAATAGCATTCCAAACTCATTCAATAAAGAGATAAAAAGAGCAGGGAAGGATTGGTTATATGGATTTTTATACAGGCACAAAGAACTCTCATTGAGGAATCCAGAAAAAACATCAATTGCACGTGCAAAGGGCTTCAACCGCGTGCCTGTTGGGAAGTTTTATGATCTCCTAGAATAtcttaatgaaaaatacaaattctCTCCAAATGATGTGTATAACGTTGACGAGACA
- Protein Sequence
- MPSHYERKTNRASWTEESMSGAIREVLQEKMGYKRASQAYGVPQTTLEDIIRKARKESLSLQKAAKKRLGRYTTVFTMAPENELVDYILCLEERLFGLTLIDVRELAFQLAESNSIPNSFNKEIKRAGKDWLYGFLYRHKELSLRNPEKTSIARAKGFNRVPVGKFYDLLEYLNEKYKFSPNDVYNVDET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448380;
- 90% Identity
- iTF_01446417;
- 80% Identity
- -