Tdou069517.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010070948.1:177-746[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-10 5.2e-07 31.5 0.1 1 38 15 52 15 56 0.94 2 2 0.27 1.6e+02 4.4 0.2 13 25 55 67 51 67 0.82
Sequence Information
- Coding Sequence
- ATGCCGAGCCATTACGAAAGAAAAACGAACAGGGCGAGTTGGACTGAAGAAAGTATGTCAGGAGCTATACGAGAAGTTTTACAAGAGAAAATGGGTTACAAGAGTGCGTCACAAGCTTATGGTGTTCCCCAGACCACATTGGAGGATAGAATTAGAAAGGCCCGAAAAGAAAGTTTGTCTCTCCAAAAAGCTGCCAAAAAGAGGTTAGGTCGTTATACAACGGTCTTCACTATGGCACCAGAAAATGAACTAGTGGACTACATATTGTGCCTTGAAGAAAGGCTGTTtggtcttaccttgattgaCGTTCGTGAACTAGCGTTTCAGTTAGCAGAAAGCAATAGCATTCCGAACTCATTcaataaagagataaaaagaGCAGGGAAGGATTGGTTATATGGATTTTTATACAGGCACAAAGAACTCTCATTGAGGAATCCAGAAAAAACATCAATTGCACGTGCAAAGGGCTTCAACCGCGTGCCTGTTGGGAAGTTTTATGATCTCCTAGAATAtcttaatgaaaaatacaaattctCTCCAAATGATGTGTATAACGTTGACGAGACA
- Protein Sequence
- MPSHYERKTNRASWTEESMSGAIREVLQEKMGYKSASQAYGVPQTTLEDRIRKARKESLSLQKAAKKRLGRYTTVFTMAPENELVDYILCLEERLFGLTLIDVRELAFQLAESNSIPNSFNKEIKRAGKDWLYGFLYRHKELSLRNPEKTSIARAKGFNRVPVGKFYDLLEYLNEKYKFSPNDVYNVDET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448380;
- 90% Identity
- iTF_01450412; iTF_01448380;
- 80% Identity
- -