Tshe021907.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010001735.1:11246-11998[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-10 2.6e-07 32.7 0.1 1 38 15 52 15 56 0.92 2 2 0.34 2.2e+02 4.0 0.2 13 25 55 67 49 67 0.82
Sequence Information
- Coding Sequence
- ATGCCGAGCCATTACGAAAGAAAAACGAACAGAGCGAGTTGGACTGAAGAAAGTATGTCAGGAGCTATACGAGAAGTTTTACAAGAGAAAATGGGTTACAAGAGAGCGTCACAAGCTTATGGTGTTCCCCAGACCACATTGGAGGATATAATTAGAAAGGCCCGAAAAGAAAGTTTGTCTCTCCAAAAAGCTGCCAAAAAGAGGTTAGGTCGTTATACAACGGTCTTCACTATGGCACCAGAAAATGAACTAGTGGACTACATATTGTGCCTTGAAGAAAGGCTGTTTGGTCTTACCTTGATTGACGTTCGTGAACTAGCGTTTCAGTTAGCAGAAAGCAATAGCATTCCAAACTCATTCAATAAAGAGATAAAAAGAGCAGGGAAGGATTGGTTATATGGATTTTTATACAGGCACAAAGAACTCTCATTGAGGAATCCAGAAAAAACATCAATTGCACGTGCAAAGGGCTTCAACCGCGTGCCTGTTGGGAAGTTTTATGATCTCCTAGAATAtcttaatgaaaaatacaaattctCTCCAAATGATGTGTATAACGTTGACGAGACAGGCATTATGACTGTGCCTAACAAACCCTCTAGGGTCCTAGCACTACGTGGGAAAAAACAAGTAGGATCTTTGTCATCAGCGGAAAGAGGCACACTTGTGACAGTCGAAACATGCATGAACGCAGCAGGGAATTTCATGCCGCCTATGTTGTCTTcccaagaaagaaataaaatccTAAGTTGA
- Protein Sequence
- MPSHYERKTNRASWTEESMSGAIREVLQEKMGYKRASQAYGVPQTTLEDIIRKARKESLSLQKAAKKRLGRYTTVFTMAPENELVDYILCLEERLFGLTLIDVRELAFQLAESNSIPNSFNKEIKRAGKDWLYGFLYRHKELSLRNPEKTSIARAKGFNRVPVGKFYDLLEYLNEKYKFSPNDVYNVDETGIMTVPNKPSRVLALRGKKQVGSLSSAERGTLVTVETCMNAAGNFMPPMLSSQERNKILS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448380;
- 90% Identity
- iTF_01449408;
- 80% Identity
- -