Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010003311.1:10511-17364[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.016 3.9 10.4 4.9 1 23 228 251 228 251 0.95

2 17 0.0013 0.31 13.8 1.8 2 23 256 277 255 277 0.97

3 17 1.7 4e+02 4.0 0.8 1 23 333 355 333 355 0.95

4 17 0.0063 1.5 11.7 2.7 1 23 361 383 361 384 0.94

5 17 0.0013 0.3 13.9 0.0 1 23 389 411 389 411 0.98

6 17 0.014 3.3 10.6 0.2 2 23 469 490 468 490 0.95

7 17 0.03 7.2 9.5 0.1 2 21 565 584 564 588 0.89

8 17 0.39 93 6.0 0.2 1 23 730 752 730 752 0.92

9 17 1.9e-05 0.0046 19.6 3.6 3 23 760 780 759 780 0.99

10 17 0.00061 0.14 14.9 0.8 1 23 809 831 809 831 0.97

11 17 0.0018 0.43 13.4 3.5 2 23 838 860 837 860 0.95

12 17 2.5e-05 0.006 19.2 1.2 1 23 892 914 892 914 0.97

13 17 0.0078 1.9 11.4 1.9 1 23 920 942 920 942 0.97

14 17 5.8e-05 0.014 18.1 0.8 1 23 948 970 948 970 0.97

15 17 0.00075 0.18 14.6 4.7 1 23 976 998 976 998 0.99

16 17 0.0002 0.047 16.4 0.3 1 23 1004 1026 1004 1026 0.97

17 17 0.011 2.6 10.9 2.5 1 23 1032 1055 1032 1055 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.016	3.9	10.4	4.9	1	23	228	251	228	251	0.95
2	17	0.0013	0.31	13.8	1.8	2	23	256	277	255	277	0.97
3	17	1.7	4e+02	4.0	0.8	1	23	333	355	333	355	0.95
4	17	0.0063	1.5	11.7	2.7	1	23	361	383	361	384	0.94
5	17	0.0013	0.3	13.9	0.0	1	23	389	411	389	411	0.98
6	17	0.014	3.3	10.6	0.2	2	23	469	490	468	490	0.95
7	17	0.03	7.2	9.5	0.1	2	21	565	584	564	588	0.89
8	17	0.39	93	6.0	0.2	1	23	730	752	730	752	0.92
9	17	1.9e-05	0.0046	19.6	3.6	3	23	760	780	759	780	0.99
10	17	0.00061	0.14	14.9	0.8	1	23	809	831	809	831	0.97
11	17	0.0018	0.43	13.4	3.5	2	23	838	860	837	860	0.95
12	17	2.5e-05	0.006	19.2	1.2	1	23	892	914	892	914	0.97
13	17	0.0078	1.9	11.4	1.9	1	23	920	942	920	942	0.97
14	17	5.8e-05	0.014	18.1	0.8	1	23	948	970	948	970	0.97
15	17	0.00075	0.18	14.6	4.7	1	23	976	998	976	998	0.99
16	17	0.0002	0.047	16.4	0.3	1	23	1004	1026	1004	1026	0.97
17	17	0.011	2.6	10.9	2.5	1	23	1032	1055	1032	1055	0.95

Sequence Information

Coding Sequence: ATGTTAACCAGGCCATTGGGCGCAAATCCTCCCTCCCACGCCAAACCACTTTCTTCAGCGCCACATTGCTTCATCTGCGACGAAGAGATCGTGGGTCGCGGAGTGCCCCTGCTTCTAGGGCACACACCCTATTCCCGGACCGGGCTCCCCACCAAGATTGGTCAACTCATGGGCGAGGGGTTTATGGTGGTGGTGTCCTTGGAAGACATGCTCTGTAAACGCTGCGCCGTGCTGCTCAACCATTTGGACAAGCTGGAGGCCGACTTGACGATTGTCCGCAACGCGCTTCTCGCGTACCTCACCGTCAAATATCGGCTCAACGACAGTGAAGAGGAGACAGAGGAATCGCAGCAGAATGGATGTTGGGGACAAAATGACAACGATAACCTGTATGAAGAAATAGACATTTCCGAAGACGTGGACGAGCGCATGGATTGGCAGGAGGACCGAGGGGATGAGTATCAGGAGGTGGTCGTTGATCAGGAATCTCTGGATGGTCGGGCGCAAGATCATTCGAGTGAAGACAGCGAAGGCTCCAAAAAAATGAATGTTGAGATAATTCTTGACAAAGTGTTCCAGCAGAGATCAAAATGCTCGGAACCAAACAAGAGGTCGGGTGAGCCCCGCAGTCTGGAAGCTGCAGACGTCGAGAACATCAGTAACTGTGAAGAGTTTGCCCCGTTCAAGTGCTCCATGTGCGACAGACGGTTTGAGAATCACAAGTGTATTCGACGACACGTCATGGAGGTTCACCTCTCCAAATGGACGTGCCATTTCTGCGATGTGAGTTTTACCGAAGAAGCAGACTTCACCTCTCACACAAAGACACATCTAGGTAATATGTCGGGATGTTTGAAGTCATCAGATGAAGATCGTTCCCCTTCGTcggttgataaaaataattgtttatcgACAGCCAGTGTCAAGAAAGCAGAATTGACTAAAACCGTGGTAGAGAGGGAAAATGTTGACACATCTGATGCGTTTGAAGAAAACTTTGAGTGCAACATTTGTGAGTTTGTAAGTCAGGATAAGCGAATATTCGACAATCACCTACGTAAGCACGTTGTTTTGAAACTGTTTAAGTGTAAATTTTGTAGCAAAAGATTTGAAGACAATGAACTTGTCCGTCAGCATGTCGACGAGCACCACAGGTCTGTTTCTTACGAGTGCGATACATGTCCGGCAGTGTTCGAAAGAGAAAATGAACTAATAGAACATGCTAAAAGTCATGAAACTTTACAACTGGATCAAAACGAAGTTGGACAAGGGCCAGTTGAAATTAAAGGAGTGGGGAATCTAAATTTGACCACTGAGCCGACCGGCCTGACCAACGTTGATGTATCTTGCACAGAACAAACCATTCAAAATAATGCGAATAGTTCGGAAGAAATAGACTTTCTGATCTGTAGCACATGCTCGATATCATTCGTTGACGAGTCTACGTACTCAGAGCACCTGAAAGCACACGAAGGTAAGGACGATAACGCCCTGATTCAACCACTCGACAACAGTTCTGCCAACACTGCACAAGAACGTTACACCTTTGTCTCCGACTCTCAAGACAACCAAGAGTATGTCGGACTGGAACTATCATTCGAGGAAATGCTGGCCAAGATCGAAGGGGGCGGTCACAATGCTGGCGACCAACCCGACAAAACATTACAAGTGCAGAGTTTGAACACATCgttaaaatgtgttgtttgtAATCTGGAATTTACGGACACCACCTTGTTGCAAGAGCACCAAGTATCTCAAGGTCATCTTGAAGATGTTTTACAGGATGACACAATCACGATAGGGGATGACGCGTCGCATTCCGTTAGTTTGGAGGTGGCCGAGTCCCAGGAAACGGGTGAAAACCAAGAGTTGGAGACTGAAAGGACAGAGAGAGGAAACAATTCTTCCGAAGAAGGCTATTTCGACGACTCGACCAACATTGTCAACATCATAACTTGCGCCAATGGAGTTTTACCGGACGAGGCGTTGTTGCAAGGCGGTGTCAAGTATGTTTTTGACGTGGGTAACGGTCAACAACTGATAGGAAATAGTTCTGACGGGATTGAATCTCTCGGCGAGTTCTGCGAGGTGCAAATTAAAACCGAGCACATGGATGCCTTGTCCAATCTGGAGGCTCATTCAAACAACGGTGAAGATCTCGGCCTCCCGAGTAACCTTAAGAAGACATTCGTATGCGCTGTTTGTGGGTATCGATCCTCGCTCATGGTTGATCTAAAGAATCACTTCACAGCACATAAAAATGACCAAAATCACGGATGTAATGTGTGCCACAAAATCTTTACAACCCAGCAGAAGCTTACGACGCATATGAAGACTCATAAAAGGTCGACCAGCAAACTCGCCGGTGAAGAACCCGAAGCGAACAGGCCCCAGCAAGTGAAACAATCCAAGGAGAAACCTTTGTACAAGTGTCAGTTCTGCGAAGAGGAGTTCTCGACCAAGAAGGCCTACAAGGCCCACGAGGAGGTCCATCCCGACATGTTCTCTCTGAAATGTCACGAGTGCGACCAGCAGTTCACCAAGGAGAAGCAGCTGAGGGAACACAAGGACACGACACACAGGGACCCTCACTGCCGCTTCTGCGGGAAAGAAATCCTAAAGTCCAAGACGCTCAAGAATCACGAGTTGCGTCATATCCGAGAGAAAGACCATTTTGAATGTGATGTTTGCAAACGAGTGTTCAAGACTAAGACGGGGCTCCGGCATCACGTGGCGGTCCACACCGGAGAGTACAAGTACTGTTGCGACTACTGCGGCCGAGGGTTCATGTCCCGGATGATGATGGAGGAACACAGGAGTATGCACACTAAAGAGGAACGCTACATCTGTGATGTCTGCGGACGCAAGTTCAGCTTCCAGAGCACGTACTGGATCCACCGCAAATGGCACGACAATCCGTACCCCTACAAGTGCAACTTCTGCAGCCGCCTCTTTAGACACTCGTCGCTGTTGGCCGTCCACAAGCGCAAGCACACAGGCGAGCGCCCTTACAAGTGTCCTCACTGCCCGCTGACGTTCCCCGTCGGTGGAACGCTCAAACGTCACTTGATCCTTCACACAGGAGTGTATCCTTTCAACTGCGACTCTTGTAACCGAGGGTTTACCACAAGACACAAGTACGCAACCCACCTTGCTAAGGTCCACTCAGAGTTCGAACTGCTCAACAACAAGCCCCAGACGGAGGACTTCAAGATGGTGATCCGAGAGGAGGGCAAGCACCCCACCGCGTTCCAGGAGCTCACCATGTGGGATGAGGGGGAGCATGACACGCTTAACTTCAAGTTGGAAGGAATCGTTGGCGACGATGACATGAGTAAAGACACGTCAATGGAGGGAATCTCTTGCACCATAGTGTCGGACGATTTGTTGGTGGAAAATATGGTGCCTACGAGGGTGGTCGAGATCGTTTTGGACAAAGCATCGCAGGCTGTAGCCACCGTCACGTTGGCGGACCATACCACTAATATGTTGCCAGAGTTTTGGTACCAAGAGTGTCAACAATAA
Protein Sequence: MLTRPLGANPPSHAKPLSSAPHCFICDEEIVGRGVPLLLGHTPYSRTGLPTKIGQLMGEGFMVVVSLEDMLCKRCAVLLNHLDKLEADLTIVRNALLAYLTVKYRLNDSEEETEESQQNGCWGQNDNDNLYEEIDISEDVDERMDWQEDRGDEYQEVVVDQESLDGRAQDHSSEDSEGSKKMNVEIILDKVFQQRSKCSEPNKRSGEPRSLEAADVENISNCEEFAPFKCSMCDRRFENHKCIRRHVMEVHLSKWTCHFCDVSFTEEADFTSHTKTHLGNMSGCLKSSDEDRSPSSVDKNNCLSTASVKKAELTKTVVERENVDTSDAFEENFECNICEFVSQDKRIFDNHLRKHVVLKLFKCKFCSKRFEDNELVRQHVDEHHRSVSYECDTCPAVFERENELIEHAKSHETLQLDQNEVGQGPVEIKGVGNLNLTTEPTGLTNVDVSCTEQTIQNNANSSEEIDFLICSTCSISFVDESTYSEHLKAHEGKDDNALIQPLDNSSANTAQERYTFVSDSQDNQEYVGLELSFEEMLAKIEGGGHNAGDQPDKTLQVQSLNTSLKCVVCNLEFTDTTLLQEHQVSQGHLEDVLQDDTITIGDDASHSVSLEVAESQETGENQELETERTERGNNSSEEGYFDDSTNIVNIITCANGVLPDEALLQGGVKYVFDVGNGQQLIGNSSDGIESLGEFCEVQIKTEHMDALSNLEAHSNNGEDLGLPSNLKKTFVCAVCGYRSSLMVDLKNHFTAHKNDQNHGCNVCHKIFTTQQKLTTHMKTHKRSTSKLAGEEPEANRPQQVKQSKEKPLYKCQFCEEEFSTKKAYKAHEEVHPDMFSLKCHECDQQFTKEKQLREHKDTTHRDPHCRFCGKEILKSKTLKNHELRHIREKDHFECDVCKRVFKTKTGLRHHVAVHTGEYKYCCDYCGRGFMSRMMMEEHRSMHTKEERYICDVCGRKFSFQSTYWIHRKWHDNPYPYKCNFCSRLFRHSSLLAVHKRKHTGERPYKCPHCPLTFPVGGTLKRHLILHTGVYPFNCDSCNRGFTTRHKYATHLAKVHSEFELLNNKPQTEDFKMVIREEGKHPTAFQELTMWDEGEHDTLNFKLEGIVGDDDMSKDTSMEGISCTIVSDDLLVENMVPTRVVEIVLDKASQAVATVTLADHTTNMLPEFWYQECQQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450862; iTF_01448841; iTF_01445895; iTF_01445044; iTF_01447814; iTF_01449856;
90% Identity: iTF_01445044;
80% Identity: -