Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010002970.1:34895-40722[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.01 2.7 11.0 4.9 1 23 242 265 242 265 0.95

2 17 0.0013 0.34 13.8 1.8 2 23 270 291 269 291 0.97

3 17 1.6 4.5e+02 4.0 0.8 1 23 347 369 347 369 0.95

4 17 0.018 4.9 10.2 3.2 1 23 375 398 375 398 0.91

5 17 0.0082 2.2 11.3 0.1 3 23 405 425 403 425 0.97

6 17 0.0034 0.92 12.5 0.1 2 23 483 504 482 504 0.95

7 17 0.08 22 8.1 0.1 2 21 579 598 578 602 0.89

8 17 0.078 21 8.2 0.2 1 23 744 766 744 766 0.96

9 17 0.0018 0.49 13.3 6.5 1 23 772 794 772 794 0.98

10 17 7.6e-05 0.021 17.7 0.7 1 23 823 845 823 845 0.97

11 17 0.0018 0.48 13.4 3.5 2 23 852 874 851 874 0.95

12 17 2.5e-05 0.0067 19.2 1.2 1 23 906 928 906 928 0.97

13 17 0.0076 2.1 11.4 1.9 1 23 934 956 934 956 0.97

14 17 5.7e-05 0.015 18.1 0.8 1 23 962 984 962 984 0.97

15 17 0.00072 0.2 14.6 4.7 1 23 990 1012 990 1012 0.99

16 17 0.00019 0.052 16.4 0.3 1 23 1018 1040 1018 1040 0.97

17 17 0.011 2.9 10.9 2.5 1 23 1046 1069 1046 1069 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.01	2.7	11.0	4.9	1	23	242	265	242	265	0.95
2	17	0.0013	0.34	13.8	1.8	2	23	270	291	269	291	0.97
3	17	1.6	4.5e+02	4.0	0.8	1	23	347	369	347	369	0.95
4	17	0.018	4.9	10.2	3.2	1	23	375	398	375	398	0.91
5	17	0.0082	2.2	11.3	0.1	3	23	405	425	403	425	0.97
6	17	0.0034	0.92	12.5	0.1	2	23	483	504	482	504	0.95
7	17	0.08	22	8.1	0.1	2	21	579	598	578	602	0.89
8	17	0.078	21	8.2	0.2	1	23	744	766	744	766	0.96
9	17	0.0018	0.49	13.3	6.5	1	23	772	794	772	794	0.98
10	17	7.6e-05	0.021	17.7	0.7	1	23	823	845	823	845	0.97
11	17	0.0018	0.48	13.4	3.5	2	23	852	874	851	874	0.95
12	17	2.5e-05	0.0067	19.2	1.2	1	23	906	928	906	928	0.97
13	17	0.0076	2.1	11.4	1.9	1	23	934	956	934	956	0.97
14	17	5.7e-05	0.015	18.1	0.8	1	23	962	984	962	984	0.97
15	17	0.00072	0.2	14.6	4.7	1	23	990	1012	990	1012	0.99
16	17	0.00019	0.052	16.4	0.3	1	23	1018	1040	1018	1040	0.97
17	17	0.011	2.9	10.9	2.5	1	23	1046	1069	1046	1069	0.95

Sequence Information

Coding Sequence: ATGTTAACCAGGCCATCGGGCGCAAATCCTCCCTCCCACGCCAAACCACTCTCTTCAGCGCGACATTGCTTCATCTGCGATGAAGAGATTGTGGGTCGCGGAGTGCCCCTGCTTCTAGGGCACACACCCTATTCCCGGACCGGGCTCCCCACCAAGATTGGTCAACTCATGGGCGAGGGGTTTATGGTGGTGGTGTCCTTGGAAGACATGCTCTGTAAACGCTGTGCCGTACTGCTCAACCATTTGGACAAGCTGGAGGCCGACTTGACGATTGTCCGCAACGCGCTTCTCGCGTACCTCACCGTCAAATATCGGCTCAACGACAGTGAAGAGGAGACGGAGGAATCGCAGCAGAACGGATGTTGGGGACAAAGTAGCGACGATCACATGATAATGAGTCAAGTGATTACATATATGGTAGTCGCATGTATGCTGCTAATAGTACAGCCGGTTCTCCCTTGGAGCGTGCAGATCGAGTGGCAGGAGGACCGGGGGGACGAGTACCAGGAGGTGGTCGTTGATCAgGAATCTCTGGATGGTCGGGCGCAAGATCATTCGAGTGAAGACAGCGAAGGCTCCAAAAAAATGAATGTTGAGATAATTCTCGACAAATCGTTCCAGCAGAGAGCCAAATGCTCGGAACCAAACAGGAGGTCGGGTGAGCCCCGCAGTCTGGAAGCCGCAGACGTCGAGAACGTCGGTAACTGTGAAGAGTTTGGCTCGTTCAAGTGCTCCATGTGCGACAGACGGTTCGAGAATCACAAGTGTGTCCGACGACACGTCATGGAGGTCCACCTCTCCAAGTGGACGTGCCATTTCTGCGATGTCAGTTTCACCGAAGAGGCAGACTTCACCTCTCACACAAAGACACATCTAGGTAATATGTCGGGATGTTTGAAGTCATCAGATGAAGATCATTCCCCTTCGTcgattgataaaaataattgtttatcgaAAGCCACTGTCGAGAAATCAGAATCGACTAAAACCGTGGTAGAGGGGGGAAATGTTGACATGTCTGATGCGTTTGAAGAAAACTTTGAGTGCAACATTTGTGAGTTTGTAAGTCAGGATAAGCGAATATTCGACAATCACCTACGTAAGCACGTTGTTTTGAAGTTGTTTAAGTGTAAATTTTGTAGCAAAAGATTTGAAGACAATGAACTTGTTCGTCAGCATGTCGACGAGTGCCACAGGTCCGTCTCTTACGGATGCGATACATGTCCGGCAGTATTCGAAAGAGAGAATGAATTAATAGAACATACTAAAAGTCACGAAACTTTACAACTGGATCAAAATGAAGTTGGACAAGGGCCAGTAGAAATTAAAGGCGTGGGGAATCTTGATTTGACCACCGAGCCAACCGGCCTGACCAATATTGATGTATCTTGCACAGAACAAACCGTTCAAAATAATGCAAATAGTTCAGAAGAAATAGAGTTTCTGATCTGTAGCACGTGCTCAATATCATTCGTTAACGAGTCCATGTACGCGGAGCACATGAAAGCACACGAAGGCAAGGACGATAACGCCCTGATTCAACCACTTGACAACAGTTCTGCCGATACCGCACAAGAACGTTACACCTTTGTCTCCGACCCTCCAGACAACCAAGAGTATGTCGAACTGGAACTATCATTCGAGGAAATGCTGGCCAAGATCGAGGCGGGCGGTCACAATGCTGCCAACCAACCCGACGAAACATTACAAGTGCAGAGTTTGAACACATCgttaaaatgtgttgtttgtAATCTGGAATTTGCGGACACCACTTTGTTGCAAGAGCACCAAGTATCGCAAGGTcatcttgaaaatgttttacaGGATGACACAATCACGATAGGGGATGACGCGTCGCATTCCGTTAGTTTGGAGGTGGCCGAGTCCCAGAAAACTATTGAAAACCAAGAGTTGGAGACTGAAAGGACGGAGAGAGGAAACAATTCTTCCGAAGAAGGCTATTTCGACGACTCGACCAACATTGTCAACATCATAACTTGCGCCAATGGGGTTTTACCGGACGAAGCGTTGTTACAAGGCGGCGTCAAGTATGTTTTTGACGTGGGTAACGGTCAACAACTGATAGGAAATAGTTCTGACGGGATTGAGTCTTTCAGCGAGTTCTGCGAGGTGCAAATTAAAACCGAGCACATGGACGCCTTGTCCAATCTAGAGGCTCGTTCAAACAACGGTGAAGATCTCGGCCTCCCGAGTAATCTCAAGAAGACATTTGTGTGCGCTGTTTGTGGATACCGATCCTCGCTCATGGCCGATCTGAAAAACCACTTCAAAGCACATAAAAATGACCAAAATCACCGATGTAATGTGTGCTGCAAAGTCTTTACAACCCAGCAGAAGCTCACGACTCATATGAAGATTCATAAAAGGTCGACCAGCAAAGTGGCCGGTGAAGAAGCTGAAGCAAACAAGCCCCAGCAAGTGAAACAATCCCGGGAGAAACTCTTGTACAAGTGTCAGTTCTGCGGAGAAGAGTTCTCGACCAAGAAGGCCTACAAGGCCCACGAGGAGGTCCATCCCGACATGTTCTCTCTGAAATGTCACGAGTGCGACCAGCAGTTCACCAAGGAGAAGCAGCTGAGGGAACACAAGGACACGACGCACAGGGACCCCCACTGCCGCTTCTGCGGGAAGGAAATCCTGAAGTCCAAGACGCTCAAGAACCACGAGTTGCGTCATATCCGAGAGAAAGACCATTTTGAATGTGATGTTTGCAAACGAGTGTTCAAGACTAAGACAGGGCTCCGGCATCACGTCGCGGTCCACACGGGGGAGTACAAGTACTGTTGTGACTACTGCGGGCGAGGGTTCATGTCCCGGATGATGATGGAGGAACACCGGAGCATGCACACTAAGGAGGAACGCTACATCTGTGATGTCTGCGGACGCAAGTTCAGCTTCCAGAGCACGTACTGGATCCACCGCAAATGGCACGACAACCCGTACCCGTACAAGTGCAACTTCTGTAGCCGCCTCTTCAGACACTCGTCGCTGTTGGCCGTCCACAAGCGCAAGCACACAGGCGAGCGCCCTTACAAGTGTCCTCACTGCCCGCTGACGTTCCCCGTCGGTGGAACGCTCAAACGTCACTTGATCCTTCACACGGGAGTGTATCCGTTCAACTGCGACTCTTGTAACCGAGGGTTCACCACGAGACACAAGTATGCAACCCACCTCGCCAAGGTCCACTCGGAGTTCGAACTGCTGAATAACAAGCCCCAGACGGAGGACTTCAAGATGGTGATCCGAGAGGAGGGGAAGCACCCCCCCGCGTTCCAGGAGCTCACCATGTGGGACGAGGGGGAGCACGACACGCTCAACTTCAAGTTGGAAGGAATCGTAGGCGACGATGACATGAGTAAAGACGCGTCAATGGAGGGAATCTCTTGCACCATAGTGTCGGACGATTTGTTGGTGGAAAATATGGTGCCTACGAGGGTGGTCGAGATCGTTTTGGACAAAGCATCGCAGGCTGTAGCCACCGTCACGTTGGCGGACCATACCACTAATATGTTGCCAGAGTTTTGGTACCAAGAGTGTCAACAATAA
Protein Sequence: MLTRPSGANPPSHAKPLSSARHCFICDEEIVGRGVPLLLGHTPYSRTGLPTKIGQLMGEGFMVVVSLEDMLCKRCAVLLNHLDKLEADLTIVRNALLAYLTVKYRLNDSEEETEESQQNGCWGQSSDDHMIMSQVITYMVVACMLLIVQPVLPWSVQIEWQEDRGDEYQEVVVDQESLDGRAQDHSSEDSEGSKKMNVEIILDKSFQQRAKCSEPNRRSGEPRSLEAADVENVGNCEEFGSFKCSMCDRRFENHKCVRRHVMEVHLSKWTCHFCDVSFTEEADFTSHTKTHLGNMSGCLKSSDEDHSPSSIDKNNCLSKATVEKSESTKTVVEGGNVDMSDAFEENFECNICEFVSQDKRIFDNHLRKHVVLKLFKCKFCSKRFEDNELVRQHVDECHRSVSYGCDTCPAVFERENELIEHTKSHETLQLDQNEVGQGPVEIKGVGNLDLTTEPTGLTNIDVSCTEQTVQNNANSSEEIEFLICSTCSISFVNESMYAEHMKAHEGKDDNALIQPLDNSSADTAQERYTFVSDPPDNQEYVELELSFEEMLAKIEAGGHNAANQPDETLQVQSLNTSLKCVVCNLEFADTTLLQEHQVSQGHLENVLQDDTITIGDDASHSVSLEVAESQKTIENQELETERTERGNNSSEEGYFDDSTNIVNIITCANGVLPDEALLQGGVKYVFDVGNGQQLIGNSSDGIESFSEFCEVQIKTEHMDALSNLEARSNNGEDLGLPSNLKKTFVCAVCGYRSSLMADLKNHFKAHKNDQNHRCNVCCKVFTTQQKLTTHMKIHKRSTSKVAGEEAEANKPQQVKQSREKLLYKCQFCGEEFSTKKAYKAHEEVHPDMFSLKCHECDQQFTKEKQLREHKDTTHRDPHCRFCGKEILKSKTLKNHELRHIREKDHFECDVCKRVFKTKTGLRHHVAVHTGEYKYCCDYCGRGFMSRMMMEEHRSMHTKEERYICDVCGRKFSFQSTYWIHRKWHDNPYPYKCNFCSRLFRHSSLLAVHKRKHTGERPYKCPHCPLTFPVGGTLKRHLILHTGVYPFNCDSCNRGFTTRHKYATHLAKVHSEFELLNNKPQTEDFKMVIREEGKHPPAFQELTMWDEGEHDTLNFKLEGIVGDDDMSKDASMEGISCTIVSDDLLVENMVPTRVVEIVLDKASQAVATVTLADHTTNMLPEFWYQECQQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446873;
90% Identity: iTF_01445044;
80% Identity: -