Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000003.1:33480787-33486315[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.013 2.6 10.4 4.9 1 23 232 255 232 255 0.95

2 17 0.0011 0.21 13.9 1.8 2 23 260 281 259 281 0.97

3 17 3.8 7.4e+02 2.7 0.5 1 23 285 307 285 307 0.91

4 17 0.022 4.2 9.8 1.6 1 23 313 336 313 336 0.93

5 17 0.028 5.4 9.5 0.0 1 23 341 363 341 363 0.98

6 17 0.00011 0.022 17.0 0.9 2 23 421 442 420 442 0.96

7 17 0.018 3.5 10.0 0.1 2 21 520 539 519 543 0.89

8 17 0.11 21 7.6 0.2 1 23 686 708 686 708 0.96

9 17 3.5e-05 0.0067 18.6 4.2 1 23 714 736 714 736 0.98

10 17 0.0005 0.097 14.9 0.8 1 23 765 787 765 787 0.97

11 17 0.00088 0.17 14.2 1.4 2 23 794 816 793 816 0.95

12 17 2.1e-05 0.0041 19.3 1.2 1 23 848 870 848 870 0.97

13 17 0.0065 1.3 11.4 1.9 1 23 876 898 876 898 0.97

14 17 4.8e-05 0.0093 18.1 0.8 1 23 904 926 904 926 0.97

15 17 0.00062 0.12 14.7 4.7 1 23 932 954 932 954 0.99

16 17 0.00016 0.032 16.5 0.3 1 23 960 982 960 982 0.97

17 17 0.009 1.7 11.0 2.5 1 23 988 1011 988 1011 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.013	2.6	10.4	4.9	1	23	232	255	232	255	0.95
2	17	0.0011	0.21	13.9	1.8	2	23	260	281	259	281	0.97
3	17	3.8	7.4e+02	2.7	0.5	1	23	285	307	285	307	0.91
4	17	0.022	4.2	9.8	1.6	1	23	313	336	313	336	0.93
5	17	0.028	5.4	9.5	0.0	1	23	341	363	341	363	0.98
6	17	0.00011	0.022	17.0	0.9	2	23	421	442	420	442	0.96
7	17	0.018	3.5	10.0	0.1	2	21	520	539	519	543	0.89
8	17	0.11	21	7.6	0.2	1	23	686	708	686	708	0.96
9	17	3.5e-05	0.0067	18.6	4.2	1	23	714	736	714	736	0.98
10	17	0.0005	0.097	14.9	0.8	1	23	765	787	765	787	0.97
11	17	0.00088	0.17	14.2	1.4	2	23	794	816	793	816	0.95
12	17	2.1e-05	0.0041	19.3	1.2	1	23	848	870	848	870	0.97
13	17	0.0065	1.3	11.4	1.9	1	23	876	898	876	898	0.97
14	17	4.8e-05	0.0093	18.1	0.8	1	23	904	926	904	926	0.97
15	17	0.00062	0.12	14.7	4.7	1	23	932	954	932	954	0.99
16	17	0.00016	0.032	16.5	0.3	1	23	960	982	960	982	0.97
17	17	0.009	1.7	11.0	2.5	1	23	988	1011	988	1011	0.95

Sequence Information

Coding Sequence: ATGTTAACCAGGCCATTGGGCGCAAATCCTCCCTCCCACACCAAACCACTTTCTTCGGCGCCACATTGCTTCATCTGTGATGAAGAGATTGTGGGTCGCGGGGTGCCCCTACTCCTAGGGCACACACCCTATTCCCGGACCGGGCTCCCCACCAAGATCGGTCAGCTCATGGGTGAGGGGTTCATGGTGGTGGTGTCCTTGGAAGACATGCTTTGTAAACGTTGTGCCGTACTGCTCAACCACTTGGACAAGCTGGAGGCCGACTTGACAATTGTCCGCAACGCGCTTCTCGCGTATCTCACCGTCAAATATCGGCTCAATGACAGCGAAGAGGAGACTGAGGAATCACAGCAGAATGGATGTCGGAGACAAAATGACAACGATGATAACCTGTATGAAGAAATAGACATTTCCGAAGATGTGGAAGATTTGGATGAGCACATTGAGTGGTTGGACGACCGAGTGGACGAGTATCAGGAGGTTGTCGTTGATCAGGAATCTCTAGATGGTCGGGCGCAAGATCATTTGAGCGAAGACAGCGAAGGCTCCAAAAAAATGAATGTTGAGATAATTCTTGACAAATCGTCCCAACAGAGAGCAAAATGCTCAGAACCGAACAAGAGGTCAGGTGAGCCCCACAGTCTTGAAGCTGCAGACATCGAGAACATCGGAAACTGCGAAGAATTTGCCTCTTTTAAGTGCTCCATGTGCGACAGACGGTTTGAGAATCACAAGTGTATTCGACGACACGTCATGGAGGTTCACCTCTCGAAGTGGACATGCCATTTCTGTGATGTGAGTTTCACCGAAGAAGCAGACTTCACCTCTCACACAAAGACGCATCTAGAAAACTTTGAGTGCAACATTTGCGAGTTTGCAAGTCAGGATAAGCGAATATTCGACGATCACCTACGTAAGCACGTTGTTTTGAAGTTGTTTAAGTGTAAATTTTGTAGCAAAAGATTTGAAGAAAATGAACTTGTTCGTCAGCATGTCAGCGAGTATCACAGGCCTGTTTCTTACGAATGTGATACATGTCCAGCAGCATTTGAAATAGAAAATGAATTAATAGAACATACTAAAAGTCATGAAACTTTACAACTGGATCAAAACGAAGTTGGACAAGGGGCAGTAGAAGTTAAAGGCGTGGAGAATCCTAATTTGATTACCATGCCAACCAGCCTGACCAACTTTGATGTGGCTGGTACAGAACAAACCATTCAAAATAATGCAAATAGTTCTGAAGAAATAGAACTTCTGATCTGTAGCACATGCTCAATAACATTCGTTAACAAGTCTATGTACTCAAAGCACATGAAAGTGCATGAGGGTAAGAATGATGATGCATTGACTCAACAACTTGATAACAGTTCTGCTAATACTGCACAAGAACATTACACCTTTGTCTCAGACTCTCAAGACAACCAAGAGTATGTCGAACTGGAACTGTCATTTGAGGAAATGCTGGCCAAGATCGAAGCAGGCGGTCACAATGCTAGCAACCAACCCGACGGATCTGGCAAAACAATCCAAGTGCAGAGTTTGAACATGTCATTAAAATGTGTTGTTTGTAATTTGGAATTTGTGGACACCTCTTTGTTGCAAGAGCACCAAGTATCACAAGGTCATcttgaaaatgttgttttacagGATGACACAGTCATGGGAGGGAACGACGCGTTGCATTCCGTTAGTTTGGAGGTGGCAGAGTCCCAACAAACGAGTGAAAACCAAGAGTTAGAGACTGAAAGGACTGAGAGAGGAAACGATTCTTCCGAAGAAGGCTATTTCGACGACTCGACCAACGTCGTCAACATCATAACTTGCGCCAATGGAGTTTTACCGGACGAAGCATTGTTACAAGGCGGTGTCAAGTATGTTTTTGATGTGGGTAATGGTCAACAGCTGATAGCAAATAGTTCCGACGGGATTGAATCCTTCAGCGATTTCTGTGAGGTACAAATTAAAACTGAGCATATGGATGCCTTGTCCAATCTAGAGGCTCATTCAAACAATAGTGAAGATTTCAGTCTCCCGAGTAATCTTAAGAAGACATTTGTATGCGCTGTTTGTGGATACCGGTCCTCGCTCATGGTTGATCTAAAAAATCACTTCAAAGCACATAAAAATGACCAAAATCATCGATGTAATGTGTGCTACAAAATCTTTACAACCCAGCAGAAGCTTACGACTCATATGAAGATTCATAAAAGGTCAACCAGCAAACTCACCAGTGAAGAACCTGAAGCAAACAAGCCCCAGCAAGTGAAACAATCCAAGGAGAAACTTTTGTACAAGTGTCAGTTCTGCGAAGAAGAGTTCTCAACCAAGAAAGCCTACAAGGCCCACGAGGAGGTCCATCCCGATATGTTCTCTCTGAAATGTGATGAGTGTGACCAGCAGTTTACGAAGGAGAAGCAACTGAGGGACCACAAGGACACGACACACAGGGACCCTCACTGCCGTTTCTGCGGGAAAGAAATCCTCAAGGCCAAGACGCTCAAGAATCATGAGTTACGTCATATCCGAGAGAAAGACCATTTTGAATGTGATGTTTGCAAGCGAGTGTTCAAGACTAAAACAGGGCTCCGGCATCACGTCGCGGTCCACACTGGTGAGTACAAATACTGTTGCGACTACTGTGGCCGAGGATTCATGTCCCGGATGATGATGGAGGAACACAGGAGTATGCACACTAAAGAGGAACGCTACATCTGTGATGTCTGCGGACGCAAGTTCAGCTTCCAGAGCACATACTGGATTCACCGCAAATGGCACGACAACCCCTACCCTTACAAGTGCAACTTCTGCAGCCGCCTTTTTAGACACTCCTCACTCCTGGCCGTCCACAAGCGCAAGCACACAGGCGAGCGCCCTTACAAGTGTCCTCACTGCCCGCTGACTTTCCCCGTTGGTGGAACGCTCAAACGTCACCTGATCCTTCACACAGGAGTGTATCCCTTCAACTGTGACTCTTGTAACCGAGGGTTCACCACGAGACACAAGTACGCAACCCATCTTGCTAAAGTCCACTCGGAGTTTGAACTGCTCAATAACAAGCCCCAAACGGAGGACTTCAAAATGGTGATCCGAGAGGAGGGGAAGCAGCCCCCCGCGTTCCAGGAGCTCACAATGTGGGATGAGGGGGAGCATGACACGCTCAACTTCAAGTTAGAAGGCATTGGAGGCGACGACGACATGAGTAAAGACACGTCGATGGAGGGTATCTCTTGCACCATAGTGTCAGACGATTTGTTGGTGGAGAATATGGTGCCTACAAGGGTGGTCGAGATCGTTTTGGATGAAGCTTCGCAGGCCGTTGCCACTGTTACGTTGGCAGACCATACCACTAATATGTTGCCAGAGTTTTGGTACCAAGAGTGTCAACAATAA
Protein Sequence: MLTRPLGANPPSHTKPLSSAPHCFICDEEIVGRGVPLLLGHTPYSRTGLPTKIGQLMGEGFMVVVSLEDMLCKRCAVLLNHLDKLEADLTIVRNALLAYLTVKYRLNDSEEETEESQQNGCRRQNDNDDNLYEEIDISEDVEDLDEHIEWLDDRVDEYQEVVVDQESLDGRAQDHLSEDSEGSKKMNVEIILDKSSQQRAKCSEPNKRSGEPHSLEAADIENIGNCEEFASFKCSMCDRRFENHKCIRRHVMEVHLSKWTCHFCDVSFTEEADFTSHTKTHLENFECNICEFASQDKRIFDDHLRKHVVLKLFKCKFCSKRFEENELVRQHVSEYHRPVSYECDTCPAAFEIENELIEHTKSHETLQLDQNEVGQGAVEVKGVENPNLITMPTSLTNFDVAGTEQTIQNNANSSEEIELLICSTCSITFVNKSMYSKHMKVHEGKNDDALTQQLDNSSANTAQEHYTFVSDSQDNQEYVELELSFEEMLAKIEAGGHNASNQPDGSGKTIQVQSLNMSLKCVVCNLEFVDTSLLQEHQVSQGHLENVVLQDDTVMGGNDALHSVSLEVAESQQTSENQELETERTERGNDSSEEGYFDDSTNVVNIITCANGVLPDEALLQGGVKYVFDVGNGQQLIANSSDGIESFSDFCEVQIKTEHMDALSNLEAHSNNSEDFSLPSNLKKTFVCAVCGYRSSLMVDLKNHFKAHKNDQNHRCNVCYKIFTTQQKLTTHMKIHKRSTSKLTSEEPEANKPQQVKQSKEKLLYKCQFCEEEFSTKKAYKAHEEVHPDMFSLKCDECDQQFTKEKQLRDHKDTTHRDPHCRFCGKEILKAKTLKNHELRHIREKDHFECDVCKRVFKTKTGLRHHVAVHTGEYKYCCDYCGRGFMSRMMMEEHRSMHTKEERYICDVCGRKFSFQSTYWIHRKWHDNPYPYKCNFCSRLFRHSSLLAVHKRKHTGERPYKCPHCPLTFPVGGTLKRHLILHTGVYPFNCDSCNRGFTTRHKYATHLAKVHSEFELLNNKPQTEDFKMVIREEGKQPPAFQELTMWDEGEHDTLNFKLEGIGGDDDMSKDTSMEGISCTIVSDDLLVENMVPTRVVEIVLDEASQAVATVTLADHTTNMLPEFWYQECQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446873;
90% Identity: iTF_01445044;
80% Identity: -