Basic Information

Insect: Timema genevievae
Gene Symbol: -
Assembly: GCA_902155825.1
Location: CABFWO010001078.1:76797-82331[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.017 3.1 10.4 4.9 1 23 237 260 237 260 0.95

2 17 0.0013 0.25 13.8 1.8 2 23 265 286 264 286 0.97

3 17 4.7 8.9e+02 2.7 0.5 1 23 342 364 342 364 0.91

4 17 0.074 14 8.3 1.4 1 23 370 393 370 393 0.90

5 17 0.034 6.4 9.4 0.0 1 23 398 420 398 420 0.98

6 17 0.00014 0.027 16.9 0.9 2 23 478 499 477 499 0.96

7 17 0.023 4.2 10.0 0.1 2 21 577 596 576 600 0.89

8 17 0.13 25 7.5 0.2 1 23 743 765 743 765 0.96

9 17 4.3e-05 0.008 18.5 4.2 1 23 771 793 771 793 0.98

10 17 0.00062 0.12 14.9 0.8 1 23 822 844 822 844 0.97

11 17 0.0011 0.2 14.1 1.4 2 23 851 873 850 873 0.95

12 17 2.6e-05 0.0049 19.2 1.2 1 23 905 927 905 927 0.97

13 17 0.008 1.5 11.4 1.9 1 23 933 955 933 955 0.97

14 17 6e-05 0.011 18.1 0.8 1 23 961 983 961 983 0.97

15 17 0.00077 0.14 14.6 4.7 1 23 989 1011 989 1011 0.99

16 17 0.0002 0.038 16.4 0.3 1 23 1017 1039 1017 1039 0.97

17 17 0.011 2.1 10.9 2.5 1 23 1045 1068 1045 1068 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.017	3.1	10.4	4.9	1	23	237	260	237	260	0.95
2	17	0.0013	0.25	13.8	1.8	2	23	265	286	264	286	0.97
3	17	4.7	8.9e+02	2.7	0.5	1	23	342	364	342	364	0.91
4	17	0.074	14	8.3	1.4	1	23	370	393	370	393	0.90
5	17	0.034	6.4	9.4	0.0	1	23	398	420	398	420	0.98
6	17	0.00014	0.027	16.9	0.9	2	23	478	499	477	499	0.96
7	17	0.023	4.2	10.0	0.1	2	21	577	596	576	600	0.89
8	17	0.13	25	7.5	0.2	1	23	743	765	743	765	0.96
9	17	4.3e-05	0.008	18.5	4.2	1	23	771	793	771	793	0.98
10	17	0.00062	0.12	14.9	0.8	1	23	822	844	822	844	0.97
11	17	0.0011	0.2	14.1	1.4	2	23	851	873	850	873	0.95
12	17	2.6e-05	0.0049	19.2	1.2	1	23	905	927	905	927	0.97
13	17	0.008	1.5	11.4	1.9	1	23	933	955	933	955	0.97
14	17	6e-05	0.011	18.1	0.8	1	23	961	983	961	983	0.97
15	17	0.00077	0.14	14.6	4.7	1	23	989	1011	989	1011	0.99
16	17	0.0002	0.038	16.4	0.3	1	23	1017	1039	1017	1039	0.97
17	17	0.011	2.1	10.9	2.5	1	23	1045	1068	1045	1068	0.95

Sequence Information

Coding Sequence: ATGGTTATTTTCCAGATGTTAACCAGGCCATTGGGCGCAAATCCTCCCTCCCACACCAAACCACTTTCTTCGGCGCCACATTGCTTCATCTGTGATGAAGAGATTGTGGGTCGCGGGGTGCCCCTACTCCTAGGGCACACACCCTATTCCCGGACCGGGCTCCCCACCAAGATCGGTCAGCTCATGGGTGAGGGGTTCATGGTGGTGGTGTCCTTGGAAGACATGCTTTGTAAACGTTGTGCCGTACTGCTCAACCACTTGGATAAGCTGGAGGCCGACTTGACAATTGTCCGCAACGCGCTTCTCGCGTATCTCACCGTCAAATATCGGCTCAATGACAGCGAAGAGGAGACTGAGGAATCACAGCAGAATGGATGTCGGAGACAAAATGACAACGATGATAACCTGTATGAAGAAATAGACATTTCCGAAGATGTGGAAGATTTGGATGAGCACATTGAGTGGCTGGACGACCGAGTGGACGAGTATCAGGAGGTTGTCGTTGATCAGGAATCTCTAGATGGTCGGGCGCAAGATCATTTGAGCGAAGACAGCGAAGGCTCCAAAAAAATGAATGTTGAGATAATTCTTGACAAATCGTCCCAACAGAGAGCAAAATGCTCAGAACCGAACAAGAGGTCAGGTGAGCCCCACAGTCTTGAAGCTGCAGACATCGAGAACATCGGAAACTGCGAAGAGTTTGCCTCTTTTAAGTGCTCCATGTGCGACAGACGGTTTGAGAATCACAAGTGTATTCGACGACACGTCATGGAGGTTCACCTCTCGAAGTGGACATGCCATTTCTGCGATGTGAGTTTCACCGAAGAAGCAGACTTCACCTCTCACACAAAGACGCATCTAGGTAATATGTCGGGACGTTTGAAGTCATCAGATGAAGATCACTCCCCTTCatcaattgataaaaataattgtttatcgACAGCCACTGTCAAGAAAGCAGAATTGACTAAAACCATGGTAGGGAGGGAAAATGTTGACATATCTGATGCGTTTGAAGAAAACTTTGAGTGCAACATTTGCGAGTTTGCAAGTCAGGATAAGCGAATATTCGACGATCACCTACGTAAGCACGTTGTTTTGAAGTTGTTTAAGTGTAAATTTTGTAGCAAAAGATTTGAAGCAAATGAACTTGTTCGTCAGCATGTCAGCGATTATCACAAGCCTGTTTCTTACGAATGTGATACATGTCCAGCAGCATTCGAAATAGAAAATGAATTAATAGAACATACTAAAAGTCATGAAACTTTACAACTGGATCAAAACAAAGTTGGACAAGGGGCAGTAGAAGTTAAAGGCGTGGAGAATCCTAACTTGATTACCATGCCAACCAGCCTGACCAACTTTGATGTGGCTGGTACAGAACAAACCATTCAAAATAATGCAAATAGTTCTGAAGAAATAGAACTTCTGATCTGTAGCACATGCTCAATAACATTCGTTAACAAGTCTATGTACTCAAAGCACATGAAAGTGCATGAGGGTAAGAATGATGATGCATTGACTCAACAACTTGATAACAGTTATGCTAATACTGCACAAGAACGTTACACCTTTGTCTCAGACTCTCAAGACAACCAAGAGTATGTCGAACTGGAACTGTCATTTGAGGAAATGCTGGCCAAGATCGAAGCAGGCGGTCACAATGCTAGCAACCAACCCGACGGATCTGGCAAAACAATCCAAGTGCAGAGTTTGAACACGTcattaaaatgtgttgtttGTAATTTGGAATTTGTGGACACCTCTTTGTTGCAAGAGCACCAAGTATCGCAAGGTCAtcttgaaaatgttgttttacagGATGACACAGTCACGGGAGGGAACGACGCGTTGCATTCCGTTAGTTTGGAGGTGGCAGAGTCCCAACAAACGAGTGAAAACCAAGAGTTAGAGACTGAAAGGACTGAGAGAGGAAACGATTCTTCCGAAGAAGGCTATTTCGACGACTCGACCAACGTCGTCAACATCATAACTTGCGCCAATGGAGTTTTACCGGACGAAGCATTGTTACAAGGCGGTGTCAAGTATGTTTTTGATGTGGGTAATGGTCAACAGCTGATAGCAAATAGTTCCGACGGGATTGAATCCTTCAGCGATTTCTGTGAGGTACAAATTAAAACTGAGCACATGGATGCCTTGTCCAATCTAGAGGCTCATTCAAACAATAGTGAAGATTTCAGTCTCCCGAGTAATCTTAAGAAGACATTTGTATGTGCTGTTTGTGGATATCGGTCCTCGCTCATGGTTGATCTAAAAAATCACTTCAAAGCACATAAAAATGACCAAAATCATCGATGTAATGTGTGCTACAAAATCTTTACAACCCAGCAGAAGCTTACGACTCATATGAAGATTCATAAAAGGTCAACCAGCAAACTCGCCGGTGAAGAACCTGAAGCAAACAAGCCCCAGCAAGTGAAACAATCCAAGGAGAAACTTTTGTACAAGTGTCAGTTCTGCGAAGAAGAGTTCTCAACCAAGAAAGCCTACAAGGCCCACGAGGAGGTCCATCCCGATATGTTCTCTCTGAAATGTGATGAGTGTGACCAGCAGTTTACGAAGGAGAAGCAACTGAGGGACCACAAGGACACGACACACAGAGACCCTCACTGCCGCTTTTGCGGGAAAGAAATCCTCAAGGCCAAGACGCTCAAGAATCATGAGTTACGTCATATCCGAGAGAAAGACCATTTTGAATGTGATGTTTGCAAGCGAGTGTTTAAGACTAAAACAGGGCTCCGGCATCACGTCGCGGTCCACACTGGTGAGTACAAATACTGTTGCGACTACTGTGGCCGAGGATTCATGTCCCGGATGATGATGGAGGAACACAGGAGTATGCACACTAAAGAGGAACGCTACATCTGTGATGTCTGTGGACGCAAGTTCAGCTTCCAGAGCACATACTGGATCCACCGCAAATGGCACGACAACCCCTACCCTTACAAGTGCAACTTCTGCAGCCGCCTCTTTAGACACTCCTCACTCCTGGCCGTCCACAAGCGCAAGCACACAGGCGAGCGCCCTTACAAGTGTCCTCACTGCCCGCTGACTTTCCCCGTTGGTGGAACGCTCAAACGTCACCTGATCCTTCACACAGGAGTGTATCCCTTCAACTGTGACTCTTGTAACCGAGGATTCACCACGAGACACAAGTACGCAACCCATCTTGCTAAAGTCCACTCGGAGTTTGAACTGCTCAATAACAAGCCCCAGATGGAGGACTTCAAAATGGTGATCCGAGAGGAGGGGAAGCAGCCCCCCGCGTTCCAGGAGCTCACAATGTGGGATGAGGGGGAGCATGACACGCTCAACTTCAAGTTAGAAGGCATTGGAGGCGACGACGACATGAGTAAAGACACGTCGATGGAGGGTATCTCTTGCACCATAGTGTCAGACGATTTGTTGGTGGAGAATATGGTGCCTACAAGGGTGGTCGAGATCGTTTTGGACGAAGCTTCGCAGGCCGTTGCCACCGTTACGTTGGCAGACCATACCACTAATATGTTGCCAGAGTTTTGGTACCAAGAGTGTCAACAATAA
Protein Sequence: MVIFQMLTRPLGANPPSHTKPLSSAPHCFICDEEIVGRGVPLLLGHTPYSRTGLPTKIGQLMGEGFMVVVSLEDMLCKRCAVLLNHLDKLEADLTIVRNALLAYLTVKYRLNDSEEETEESQQNGCRRQNDNDDNLYEEIDISEDVEDLDEHIEWLDDRVDEYQEVVVDQESLDGRAQDHLSEDSEGSKKMNVEIILDKSSQQRAKCSEPNKRSGEPHSLEAADIENIGNCEEFASFKCSMCDRRFENHKCIRRHVMEVHLSKWTCHFCDVSFTEEADFTSHTKTHLGNMSGRLKSSDEDHSPSSIDKNNCLSTATVKKAELTKTMVGRENVDISDAFEENFECNICEFASQDKRIFDDHLRKHVVLKLFKCKFCSKRFEANELVRQHVSDYHKPVSYECDTCPAAFEIENELIEHTKSHETLQLDQNKVGQGAVEVKGVENPNLITMPTSLTNFDVAGTEQTIQNNANSSEEIELLICSTCSITFVNKSMYSKHMKVHEGKNDDALTQQLDNSYANTAQERYTFVSDSQDNQEYVELELSFEEMLAKIEAGGHNASNQPDGSGKTIQVQSLNTSLKCVVCNLEFVDTSLLQEHQVSQGHLENVVLQDDTVTGGNDALHSVSLEVAESQQTSENQELETERTERGNDSSEEGYFDDSTNVVNIITCANGVLPDEALLQGGVKYVFDVGNGQQLIANSSDGIESFSDFCEVQIKTEHMDALSNLEAHSNNSEDFSLPSNLKKTFVCAVCGYRSSLMVDLKNHFKAHKNDQNHRCNVCYKIFTTQQKLTTHMKIHKRSTSKLAGEEPEANKPQQVKQSKEKLLYKCQFCEEEFSTKKAYKAHEEVHPDMFSLKCDECDQQFTKEKQLRDHKDTTHRDPHCRFCGKEILKAKTLKNHELRHIREKDHFECDVCKRVFKTKTGLRHHVAVHTGEYKYCCDYCGRGFMSRMMMEEHRSMHTKEERYICDVCGRKFSFQSTYWIHRKWHDNPYPYKCNFCSRLFRHSSLLAVHKRKHTGERPYKCPHCPLTFPVGGTLKRHLILHTGVYPFNCDSCNRGFTTRHKYATHLAKVHSEFELLNNKPQMEDFKMVIREEGKQPPAFQELTMWDEGEHDTLNFKLEGIGGDDDMSKDTSMEGISCTIVSDDLLVENMVPTRVVEIVLDEASQAVATVTLADHTTNMLPEFWYQECQQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446873;
90% Identity: iTF_01445044;
80% Identity: -