Basic Information

Insect: Timema cristinae
Gene Symbol: -
Assembly: GCA_002928295.1
Location: CM009472.1:53479209-53485210[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.069 10 8.3 6.0 1 23 228 251 228 251 0.93

2 17 0.0011 0.17 13.8 1.8 2 23 256 277 255 277 0.97

3 17 1.5 2.2e+02 4.0 0.8 1 23 333 355 333 355 0.95

4 17 0.027 3.9 9.5 1.4 1 23 361 384 361 384 0.91

5 17 0.00051 0.074 15.0 0.1 1 23 389 411 389 411 0.98

6 17 0.0035 0.51 12.3 0.2 2 23 469 490 468 490 0.95

7 17 0.074 11 8.2 0.1 2 21 568 587 567 591 0.89

8 17 0.045 6.6 8.8 0.2 1 23 733 755 733 755 0.97

9 17 3.7e-05 0.0054 18.5 4.2 1 23 761 783 761 783 0.98

10 17 0.00054 0.079 14.9 0.8 1 23 812 834 812 834 0.97

11 17 0.0016 0.24 13.4 3.5 2 23 841 863 840 863 0.95

12 17 2.3e-05 0.0033 19.2 1.2 1 23 895 917 895 917 0.97

13 17 0.0069 1 11.4 1.9 1 23 923 945 923 945 0.97

14 17 5.2e-05 0.0076 18.1 0.8 1 23 951 973 951 973 0.97

15 17 0.00066 0.097 14.6 4.7 1 23 979 1001 979 1001 0.99

16 17 0.00018 0.026 16.4 0.3 1 23 1007 1029 1007 1029 0.97

17 17 0.0097 1.4 10.9 2.5 1 23 1035 1058 1035 1058 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.069	10	8.3	6.0	1	23	228	251	228	251	0.93
2	17	0.0011	0.17	13.8	1.8	2	23	256	277	255	277	0.97
3	17	1.5	2.2e+02	4.0	0.8	1	23	333	355	333	355	0.95
4	17	0.027	3.9	9.5	1.4	1	23	361	384	361	384	0.91
5	17	0.00051	0.074	15.0	0.1	1	23	389	411	389	411	0.98
6	17	0.0035	0.51	12.3	0.2	2	23	469	490	468	490	0.95
7	17	0.074	11	8.2	0.1	2	21	568	587	567	591	0.89
8	17	0.045	6.6	8.8	0.2	1	23	733	755	733	755	0.97
9	17	3.7e-05	0.0054	18.5	4.2	1	23	761	783	761	783	0.98
10	17	0.00054	0.079	14.9	0.8	1	23	812	834	812	834	0.97
11	17	0.0016	0.24	13.4	3.5	2	23	841	863	840	863	0.95
12	17	2.3e-05	0.0033	19.2	1.2	1	23	895	917	895	917	0.97
13	17	0.0069	1	11.4	1.9	1	23	923	945	923	945	0.97
14	17	5.2e-05	0.0076	18.1	0.8	1	23	951	973	951	973	0.97
15	17	0.00066	0.097	14.6	4.7	1	23	979	1001	979	1001	0.99
16	17	0.00018	0.026	16.4	0.3	1	23	1007	1029	1007	1029	0.97
17	17	0.0097	1.4	10.9	2.5	1	23	1035	1058	1035	1058	0.95

Sequence Information

Coding Sequence: ATGTTAACCAGGCCATTGGGCGCAAATCTTCCCTCCCACACCAAACCACTTTCTTCAGCGCCACATTGCTTCATCTGTGATGAAGAGATTGTGGGTCGTGGAGTGCCCCTACTTCTAGGGCACACACCCTATTCCCGGACCGGGCTCCCCACCAAGATTGGTCAGCTCATGGGTGAGGGGTTTATGGTGGTGGTGTCCTTGGAAGACATGCTCTGTAAACGTTGTGCCGTACTGCTCAACCATTTGGACAAGCTGGAGGCCGACTTGATGATTGTCCGCAACGCGCTTCTCGCGTACCTCACCGTCAAATATCGGCTCAATGACAGTGAAGAGGAGACAGAGGAATCACAGCAGAATGGATGCCGGGGACAAAATGACAACGATAACCTGTATGAAGAAATAGACATTTCCGAAGATGTGGATGAGCACATCGAGTGGCTGGAGGACCAAGTGGACGAGTATCAGGAGGTTGTTGTTGATCAgGAATCTCTGGCTGGTCGGGCGCAAGATCATTCGAGTGAAGACAGCGAAGGCTCCAAAAAAATGAATGTTGAGATAATTCTTGACAAATCGTTCCAGCAGAGAGCAAAATGCTCAGAATCAAACAAGAGGTCAGGTGAGCCCCACAGTCTCGAAGCTGCAGACGTCGAGAACATCAGTAACTGTGAAGAGTTTGCCTCGTTTAAGTGCTCCATGTGCGACAGACGGTTTGAGAATCACAAGTGTATTCGACGACACTTCATGGAGGTTCACCTCTCTAAGTGGACGTGCCATTTCTGCGATGTGAGTTTTACTGAAGAAGCAGACTTCACCTCTCACACAAAGACACATCTGGGTAATATGTCGGGACGTTTGAAGTCATCAGATGAAGATCATTCCCCTTCATcgattgatataaataattgtttatcaacAGTCACTGTCAAGAAAGCAGAATTGACTAAAACCATGGTAGAGAGGGAAAATGTTGACACATCTGATGCGTTTGAAGAAAACTTTGAGTGCAACATTTGTGAGTTTGTAAGTCAGGATAAGCGAATATTCGACAATCACCTACGTAAGCATGTTGTTTTGAAGTTGTTTAAGTGTAAATTTTGTAGCAAAAGATTTGAAGAAAATGAACTTGTTCGTCAGCATGTCGACGAGTACCACAGGTCTGTTTCTTACGAATGCGATACATGTCCGGCAGTATTCGAAAGAGAAAATGAATTAATAGAACATACTAAAAGTCATGAAACTTTACAACTGGATCAAAACGAAGTTGGACAAGGGTCAGTAGAAATTAAAGGCGTGGGGAATCTTAATTTGACTACCGAGCCAACCGGCCTGACCAACTTTGATGTATCCTGTACAGAACAAACCATTCAAAATAATGCGAATAGTTCTGAAGAAGTAGAATTTCTGATCTGTAGCACATGCTCAATATCATTCGTTAACGAGTCTATGTACTCGGAGCACATGAAAGCACACGAAGGTAAGGACGATAATGCCCTGATTCAACCACTTGAAAACAGTTCTGCTAACACTGCACAAGAACGTTACACCTTTGTCTCAGACTCTCAAGACAACCAAGAGTATGTCGAACTGGAACTATCATTCGAGGAAATGCTGGCCAAGATCGAAGGGGCCGGTCACAATGCTGGCAACCAACCCGACGAACCTGGCAAAACATTACAAGTGCAGAGTTTGAACACAtcattaaaatgtgttgtttgtAATTTGGAATTTGCGGACACCACTTTGTTGCAAGAGCACCAAGTATCGCAAGGTcatcttgaaaatgttttacagGATGAGACAATCACGATAGGGCATGACGTGTCGGATTCCGTTAGTTTGGAGGTGGCGGAGTCCCAGAAAACGAGTGAAAACCAAGAGTTAGAGACTGAAAGGACAGAGAGAGGAAACAATTCTTCCGAAGAAGGCTATTTCGACGACTCTACCAACGTCGTCAACATCATAACTTGTGCCAATGGAGTTTTACCGGACGAAACGTTGTTACAAGGCGGTGTCAAGTATGTTTTTGATGTGGGCAACGGTCAACAACTGATAGGAAATAGTTCTGACGGGATTGAATCTTTCAGCGAGTTTTGCGAGGTACAAATTAAAACTGAGCACATGGATGCCTTGTCCAATCTAGAGGCTCATTCAAACAATAGTGAAGATTTTGGCCTCCCGAGTAATCTTAAGAAGACATTTGTATGCGCTGTTTGTGGATACCGATCCTCGCTCATGGTAGATCTAAAAAATCACTTCAAAGTAcataaaaatgaccaaaatcACCGATGTAATGTGTGCTACAAAATCTTTACAACCCAGCAGAAGCTTACGACTCATATGAAGATTCATAAAAGGTCAACCAGCAAACTCGCCAGTGAAGAACCTGAAGCAAACAAGCCTCAGCAAGTGAAACAATCCAGAGAGAAACTTTTGTACAAGTGTCAGTTCTGCGAAGAAGAGTTCTCAACCAAGAAAGCCTACAAGGCCCACGAGGAGGTCCATCCAGATATGTTCTCTCTGAAATGTCATGAGTGTGACCAGCAGTTTACGAAGGAGAAGCAACTGAGGGAACACAAGGACACGACACACAGGGACCCTCACTGCCGCTTCTGCGGGAAAGAAATCCTCAAGTCCAAGACGCTCAAGAATCACGAATTACGTCATATCCGAGAGAAAGACCATTTCGAATGTGATGTTTGCAAACGAGTGTTCAAGACTAAAACAGGGCTTCGGCATCATGTCGCGGTCCACACTGGGGAGTACAAGTACTGTTGCGACTATTGCGGCCGAGGATTCATGTCCCGGATGATGATGGAGGAACACAGGAGTATGCACACTAAAGAGGAACGCTATATCTGTGATGTCTGCGGACGCAAGTTCAGCTTCCAGAGCACATACTGGATCCACCGCAAATGGCATGACAACCCGTACCCCTACAAGTGCAACTTCTGCAGCCGCCTCTTTAGACACTCCTCGCTGTTGGCTGTCCACAAGCGCAAGCACACAGGCGAGCGCCCTTACAAGTGTCCTCACTGCCCGCTGACGTTCCCCGTTGGTGGAACGCTCAAACGTCACCTGATCCTTCACACAGGAGTGTATCCTTTCAACTGCGACTCTTGTAACCGAGGGTTTACCACGAGACACAAGTATGCAACCCACCTTGCTAAGGTCCACTCAGAGTTCGAACTGCTCAATAACAAGCCTCAGACGGAGGACTTCAAAATGGTGATCCGAGAGGAGGGGAAGCACCCCCCCGCGTTCCAGGAGCTCACAATGTGGGATGAGGGGGAGCATGACACGCTCAACTTCAAGTTGGAAGGAATTGTAGGCGACGATGACATGAGTAAAGACACGTCAATGGAGGGAATCTCTTGCACCATAGTGTCAGACGATTTGTTGGTGGAAAATATGGTGCCTACGAGGGTGGTCGAGATTGTTTTGGACAAAGCCTCGCAGGCTGTCGCCACCGTTACGTTGGCGGACCATACCACTAATATGTTGCCAGAGTTTTGGTACCAAGAGTGTCAACAATAA
Protein Sequence: MLTRPLGANLPSHTKPLSSAPHCFICDEEIVGRGVPLLLGHTPYSRTGLPTKIGQLMGEGFMVVVSLEDMLCKRCAVLLNHLDKLEADLMIVRNALLAYLTVKYRLNDSEEETEESQQNGCRGQNDNDNLYEEIDISEDVDEHIEWLEDQVDEYQEVVVDQESLAGRAQDHSSEDSEGSKKMNVEIILDKSFQQRAKCSESNKRSGEPHSLEAADVENISNCEEFASFKCSMCDRRFENHKCIRRHFMEVHLSKWTCHFCDVSFTEEADFTSHTKTHLGNMSGRLKSSDEDHSPSSIDINNCLSTVTVKKAELTKTMVERENVDTSDAFEENFECNICEFVSQDKRIFDNHLRKHVVLKLFKCKFCSKRFEENELVRQHVDEYHRSVSYECDTCPAVFERENELIEHTKSHETLQLDQNEVGQGSVEIKGVGNLNLTTEPTGLTNFDVSCTEQTIQNNANSSEEVEFLICSTCSISFVNESMYSEHMKAHEGKDDNALIQPLENSSANTAQERYTFVSDSQDNQEYVELELSFEEMLAKIEGAGHNAGNQPDEPGKTLQVQSLNTSLKCVVCNLEFADTTLLQEHQVSQGHLENVLQDETITIGHDVSDSVSLEVAESQKTSENQELETERTERGNNSSEEGYFDDSTNVVNIITCANGVLPDETLLQGGVKYVFDVGNGQQLIGNSSDGIESFSEFCEVQIKTEHMDALSNLEAHSNNSEDFGLPSNLKKTFVCAVCGYRSSLMVDLKNHFKVHKNDQNHRCNVCYKIFTTQQKLTTHMKIHKRSTSKLASEEPEANKPQQVKQSREKLLYKCQFCEEEFSTKKAYKAHEEVHPDMFSLKCHECDQQFTKEKQLREHKDTTHRDPHCRFCGKEILKSKTLKNHELRHIREKDHFECDVCKRVFKTKTGLRHHVAVHTGEYKYCCDYCGRGFMSRMMMEEHRSMHTKEERYICDVCGRKFSFQSTYWIHRKWHDNPYPYKCNFCSRLFRHSSLLAVHKRKHTGERPYKCPHCPLTFPVGGTLKRHLILHTGVYPFNCDSCNRGFTTRHKYATHLAKVHSEFELLNNKPQTEDFKMVIREEGKHPPAFQELTMWDEGEHDTLNFKLEGIVGDDDMSKDTSMEGISCTIVSDDLLVENMVPTRVVEIVLDKASQAVATVTLADHTTNMLPEFWYQECQQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446873;
90% Identity: iTF_01445044;
80% Identity: -