Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010001043.1:47662-55187[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.6e-05 0.0063 19.2 1.3 1 23 137 159 137 159 0.98

2 14 0.00065 0.15 14.8 3.2 1 23 165 187 165 187 0.97

3 14 0.07 17 8.4 2.6 1 23 194 216 194 216 0.98

4 14 3.9e-06 0.00093 21.8 0.6 2 23 224 245 223 245 0.97

5 14 2.6e-05 0.0061 19.2 4.3 1 23 250 272 250 272 0.98

6 14 0.00032 0.077 15.7 0.4 1 23 312 334 312 334 0.97

7 14 0.00018 0.044 16.5 0.6 1 23 340 362 340 362 0.95

8 14 1e-06 0.00024 23.6 1.1 2 23 369 390 368 390 0.98

9 14 3e-05 0.0072 19.0 5.5 1 23 396 418 396 418 0.97

10 14 0.0027 0.65 12.8 3.4 1 23 426 448 426 448 0.98

11 14 4.1e-05 0.0097 18.6 1.6 3 23 456 476 454 476 0.95

12 14 9.4e-08 2.2e-05 26.9 0.6 1 23 482 504 482 504 0.98

13 14 0.0025 0.6 12.9 4.6 1 23 510 532 510 532 0.96

14 14 1.4e-05 0.0033 20.0 0.2 1 23 538 560 538 560 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.6e-05	0.0063	19.2	1.3	1	23	137	159	137	159	0.98
2	14	0.00065	0.15	14.8	3.2	1	23	165	187	165	187	0.97
3	14	0.07	17	8.4	2.6	1	23	194	216	194	216	0.98
4	14	3.9e-06	0.00093	21.8	0.6	2	23	224	245	223	245	0.97
5	14	2.6e-05	0.0061	19.2	4.3	1	23	250	272	250	272	0.98
6	14	0.00032	0.077	15.7	0.4	1	23	312	334	312	334	0.97
7	14	0.00018	0.044	16.5	0.6	1	23	340	362	340	362	0.95
8	14	1e-06	0.00024	23.6	1.1	2	23	369	390	368	390	0.98
9	14	3e-05	0.0072	19.0	5.5	1	23	396	418	396	418	0.97
10	14	0.0027	0.65	12.8	3.4	1	23	426	448	426	448	0.98
11	14	4.1e-05	0.0097	18.6	1.6	3	23	456	476	454	476	0.95
12	14	9.4e-08	2.2e-05	26.9	0.6	1	23	482	504	482	504	0.98
13	14	0.0025	0.6	12.9	4.6	1	23	510	532	510	532	0.96
14	14	1.4e-05	0.0033	20.0	0.2	1	23	538	560	538	560	0.98

Sequence Information

Coding Sequence: ATGGAGGAGGGTGTAATGCGAGATATCGAGTTGGGGGATGTTATCTATCCTGAGCTGATCATGAAAGTGGAAGTTGCGGACACAGACTCAATGATGaGCACCCCAGAAGCAGTCAGCAACTGGGACATTGTATGGAAAGAAGACGGACACGCAGAGATTGTGTTGAAACAAGAGGTGATTAATGACGACATTAGAGAATCTGACACTTTGGCTGCCACGATCCACCTCCTTTCTGAAGATTTCGACATTTCCCTGTCTACATTTTCATCCAATGGAGATGAGAGCACCGCCTCACTAATAGACCCTGTTTCGAGCGAAGTATTTCAAGACAAGGTGCAACGGGTTAACAATCCACACAAAGTGAAGGGCCCCACCAAGACACGCCAGCTCCATATATCACCACGACAGTTCTCCTGTGATATATGCAACAAGAGCTACATGTCAAAGCGAGGCTTAACAGAGCACCAGATGAAGCACTCTGGACAAAGGCCGTTCTCTTGCGACCAGTGTGGTCGCTTGTTCACCACGCGGAGGCTGCTGTGCTCTCACAAGCTGGTGCATGCGGTCATACGTACCACACATCAGTGTGGCACGTGTTACAAGACGTATCTGAGCGCGCAAGCCCTGCGGACACACCGGCAGTCCCACACGGGGCGGCGCCTCCCGGTGCGTTGTCAGGTGTGCGAGGCCACCTTCACTCAGAGGGGCTCTCTACGGCGCCACATGATGTCCCACGGGGTGGGCGGCTACCCCTGCCCCCATTGCAACAGGCGTTACTCCAGGAAGGATAAGTTTCAGGACCACTTGAGGTTCCACGACGGGGACACCAGGGTGCGATGCCGGTTCTGCCGGGTTTATTTCCCTAGCCACGAGGCTCGCAAACAGCATTACCTCGACAAGCCTGACCACGTCCGCCAGGAGAATGTCCGGGTGTTTGAGTGCCAGGACTGCGGCAAGAGCATCCGGGGCAAGAGGAACTATGAGACCCATGTACTGAACCATCGCGGGGAGAAGAACTTCCTTTGCGACACGTGCGGCCAGAGGTTCGTCTCCTATAAGCTCCTCAAATCTCACCAGGCGATCCATACAATCCGCTCGCCGGTCCAGTGTCCGCTCTGCGAGAAATCTTTCCGCCACAAGGGCGGTCTTCGGTCACACCTTCGGGTCCACAGGGGTGTGAAGATGTTCAAGTGCCACCTCTGCGACAAGGCGTTCAGTCAGAACTGTACGCTACGCAAACACGTGCTCCTGCACCTCGGCAAGCCTATACACAAGTACGAGTGCCACGTCTGCTCAAAGAGATTCCTGTTCCGCGACAAGATGAAGAGACACATGATAGTTCACACGGGTGAGCGGCCGGTCCACTGTGAACTGTGTCAGCGCAGCTTCGCTGACAAAAAGAGTCTGAAGACCCACATGCTGGCTCACACCGGGGAAATGCCCTATGAATGCGATGACTGTGGCCGCAAGTTTCGACAGCGAGGGAACCTCATTAAACACCTACAGCTCCACGCCGGGGAACTTCCGTTCGAGTGCCGTACATGCAAACACCGGTTCTCCCGCAAGGACAAGCTGAAACTTCACGAGGGCACACACCAAGGTCTGAGGCCCTATCCTTGTCCCGTGTGTGGCCGAGGTTTCACTCAAAGTGGCTCTCGAAAACTACACCTGCGTCTTCATTCGGCCCGGGATCTGCGTCGGTATGGGCTGATAAAGACATCCACTGGGGTAGTGCAGTCAATACCGAGCTGA
Protein Sequence: MEEGVMRDIELGDVIYPELIMKVEVADTDSMMSTPEAVSNWDIVWKEDGHAEIVLKQEVINDDIRESDTLAATIHLLSEDFDISLSTFSSNGDESTASLIDPVSSEVFQDKVQRVNNPHKVKGPTKTRQLHISPRQFSCDICNKSYMSKRGLTEHQMKHSGQRPFSCDQCGRLFTTRRLLCSHKLVHAVIRTTHQCGTCYKTYLSAQALRTHRQSHTGRRLPVRCQVCEATFTQRGSLRRHMMSHGVGGYPCPHCNRRYSRKDKFQDHLRFHDGDTRVRCRFCRVYFPSHEARKQHYLDKPDHVRQENVRVFECQDCGKSIRGKRNYETHVLNHRGEKNFLCDTCGQRFVSYKLLKSHQAIHTIRSPVQCPLCEKSFRHKGGLRSHLRVHRGVKMFKCHLCDKAFSQNCTLRKHVLLHLGKPIHKYECHVCSKRFLFRDKMKRHMIVHTGERPVHCELCQRSFADKKSLKTHMLAHTGEMPYECDDCGRKFRQRGNLIKHLQLHAGELPFECRTCKHRFSRKDKLKLHEGTHQGLRPYPCPVCGRGFTQSGSRKLHLRLHSARDLRRYGLIKTSTGVVQSIPS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450808; iTF_01448796; iTF_01449827; iTF_01444998; iTF_01447763;
90% Identity: iTF_01450808;
80% Identity: -