Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010001854.1:53557-59239[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7e-05 0.016 17.8 1.2 1 23 70 92 70 92 0.98

2 14 2e-05 0.0045 19.5 3.4 1 23 98 120 98 120 0.98

3 14 0.0086 1.9 11.2 1.1 2 23 128 149 127 149 0.97

4 14 5.1e-06 0.0011 21.4 1.1 3 23 157 177 156 177 0.97

5 14 2.7e-06 0.00061 22.3 3.1 1 23 182 204 182 204 0.98

6 14 0.00093 0.21 14.3 0.6 1 23 244 266 244 266 0.97

7 14 6.8e-05 0.015 17.9 0.9 1 23 272 294 272 294 0.95

8 14 8.6e-06 0.0019 20.7 4.0 2 23 301 322 300 322 0.97

9 14 2.4e-05 0.0054 19.3 6.0 1 23 328 350 328 350 0.98

10 14 0.0032 0.72 12.6 0.9 1 23 358 380 358 380 0.98

11 14 9.5e-06 0.0021 20.5 0.5 2 23 387 408 386 408 0.96

12 14 6.3e-08 1.4e-05 27.4 0.4 1 23 414 436 414 436 0.98

13 14 0.00067 0.15 14.7 5.5 1 23 442 464 442 464 0.96

14 14 1.6e-05 0.0036 19.8 0.2 1 23 470 492 470 492 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7e-05	0.016	17.8	1.2	1	23	70	92	70	92	0.98
2	14	2e-05	0.0045	19.5	3.4	1	23	98	120	98	120	0.98
3	14	0.0086	1.9	11.2	1.1	2	23	128	149	127	149	0.97
4	14	5.1e-06	0.0011	21.4	1.1	3	23	157	177	156	177	0.97
5	14	2.7e-06	0.00061	22.3	3.1	1	23	182	204	182	204	0.98
6	14	0.00093	0.21	14.3	0.6	1	23	244	266	244	266	0.97
7	14	6.8e-05	0.015	17.9	0.9	1	23	272	294	272	294	0.95
8	14	8.6e-06	0.0019	20.7	4.0	2	23	301	322	300	322	0.97
9	14	2.4e-05	0.0054	19.3	6.0	1	23	328	350	328	350	0.98
10	14	0.0032	0.72	12.6	0.9	1	23	358	380	358	380	0.98
11	14	9.5e-06	0.0021	20.5	0.5	2	23	387	408	386	408	0.96
12	14	6.3e-08	1.4e-05	27.4	0.4	1	23	414	436	414	436	0.98
13	14	0.00067	0.15	14.7	5.5	1	23	442	464	442	464	0.96
14	14	1.6e-05	0.0036	19.8	0.2	1	23	470	492	470	492	0.98

Sequence Information

Coding Sequence: ATGTCCTCATTTCTTAGGATCCATCTCCTTTCTGAAGATTTCGACATTTCCCTGTCTACATTTTCATCCAATGGCGACGAGAGCAGTGCCTCACTAATAGACCCTGTTTCAAGCGAAGTATTTCAAGACAAGGTGCACCGGGTTAACAATCCACACAAAGTGAAGGGCCCCGCCAAGACACGCCAGCTCCATATATCACCAAGAAAGTTCTCCTGTGCTATATGCAACAAGAGCTACATGTCAAAGCGGGGCTTAAAAGAGCACCAGATGAAGCACTCTGGACTGAGGCCTTTCTCTTGTGACCAGTGTGGTCGCTCGTTCACCACGCGGAGGCTGCTGTGCTCTCACAGGCTGGTGCATGCGGCCGTACGTAGCGCAGTTCAGTGTGGCACGTGTCACAAGACGTATCTGAGCGCGCAAGCCCTGCGGACACACCAGCAGATCCACACGGGGCGCCTCCGGGAGCATTGTCCGGTGTGCGAGGCCACCTTCACTCAGAGGGGCTCCCTACAGCGCCACATGATGTCCCATGGGGAGGGCGGCTACCCCTGCCCCCATTGCAACAAGCGTTACTCCAGGAATGATAAGCTTCAGGACCACTTGAGGTTCCACAACGGGGACACCAGGGTGCGATGCCGCTTCTGCCGGGCTTATTTCCCTGACCACGAGGCTCGCAAACAGCATTACATCGACAAGCCTGGCCATGTCCGTCAGGAGAATGTCCAGGTGTTTGAGTGCCAGGACTGCGGCAAGAAGATCCGGGGCAAGAGAAACTATGAGACCCATGTACTGAACCATCGTGGGGAGAAGAACTTTCTTTGCGACACATGCGGTCAGAGGTTCGTCTCCTCTAAGCTCCTCAAATCTCACCAGGTGACTCATGCGACCCGGTCGCCGGTAGAGTGTCCGCTTTGCGAGAAATCTTTCTGCCACAAGACCAGTCTTCGGACACACCTTCGGATCCACAGGGGTGTGAAGATGTTCAAATGTCACCTCTGTGAGAAGGCATTCAGTCAGAACTGTACACTTCGCAAGCACATGCTTCTGCACCTCGGGAAGCCTATACACAAGTACGAGTGCCACATCTGCTCAAAGGGATTCCTGGGCCTTGACAAGATGAAAAGACACATGATAGTTCACACGGGTGAGCGGCCGGTCCAATGTGAACTGTGTCAGCGCAGCTTCGCTGACAAAAAGAGTCTGAAGACCCACATGCTGGCTCACACCGGGGAAATGCCCTATGAATGCGATGACTGTGGCCGCAAGTTTCGACAGCGAGGGAACCTCATTAAGCACATACAGCTCCATGCCGGGGAACTTCCGTTCGAGTGCCATGTATGCAAACATCGGTTCTCGCGCAAGGACAAGCTGAAACTCCATGAGGGCACACACCAAGGTCTGAGGCCCTATCCTTGTCCCGTGTGTGGCCGAGGATTCACTCAAAGTGGCTCTCGAAAACTACACCTGCGTCTTCATTCGGCCCGGGATCTGCGTCGGTATGGGCTGATAAAGACATCCAATGGGGCTGGTGAAAACTACCAGCAGAGGAATACAGTGGGCTGGGGAGAACTACCAGCAGATGAACACACCAGACTGGTGAGAACTATCAGCATGGTGATATTATGGGCTGATGAGAGCTACCAGCAGAGGAACACAGTGGGCTGGagtGGAGTATGGGGATGTGTGCGCTGGTGTGATGATCTGTACGGCAAGTGGCATCATTCTGTGCATTTGCGATTTTATTATGGACCGCAAACTCGAGCAGAGAGCGAACATCATATTCTACGTCTTACTCGGAAAATCTGGAACCGAGACCTTCCAAATGATGCGGCAGTGAAGCTACGAGCCGTCCGGTGTGTTTTGAGTGGCACTCGCGCTTCAGAAGCTGCCGATTGCTCAATATTCACAGTGGAAGAGCCCCAGATCTCCAAGATCGAATTTCTGGATTTGTGCTCGTGGAAGGTCGCCCAGACCTCTCTTCGTCTTTCAATGACGTTCTGGCTCTCCTGA
Protein Sequence: MSSFLRIHLLSEDFDISLSTFSSNGDESSASLIDPVSSEVFQDKVHRVNNPHKVKGPAKTRQLHISPRKFSCAICNKSYMSKRGLKEHQMKHSGLRPFSCDQCGRSFTTRRLLCSHRLVHAAVRSAVQCGTCHKTYLSAQALRTHQQIHTGRLREHCPVCEATFTQRGSLQRHMMSHGEGGYPCPHCNKRYSRNDKLQDHLRFHNGDTRVRCRFCRAYFPDHEARKQHYIDKPGHVRQENVQVFECQDCGKKIRGKRNYETHVLNHRGEKNFLCDTCGQRFVSSKLLKSHQVTHATRSPVECPLCEKSFCHKTSLRTHLRIHRGVKMFKCHLCEKAFSQNCTLRKHMLLHLGKPIHKYECHICSKGFLGLDKMKRHMIVHTGERPVQCELCQRSFADKKSLKTHMLAHTGEMPYECDDCGRKFRQRGNLIKHIQLHAGELPFECHVCKHRFSRKDKLKLHEGTHQGLRPYPCPVCGRGFTQSGSRKLHLRLHSARDLRRYGLIKTSNGAGENYQQRNTVGWGELPADEHTRLVRTISMVILWADESYQQRNTVGWSGVWGCVRWCDDLYGKWHHSVHLRFYYGPQTRAESEHHILRLTRKIWNRDLPNDAAVKLRAVRCVLSGTRASEAADCSIFTVEEPQISKIEFLDLCSWKVAQTSLRLSMTFWLS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446823;
90% Identity: -
80% Identity: -