Tpod052784.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000012.1:56292998-56302197[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6e-05 0.012 17.8 1.2 1 23 137 159 137 159 0.98 2 13 1.7e-05 0.0033 19.5 3.4 1 23 165 187 165 187 0.98 3 13 0.0042 0.81 12.0 1.7 2 23 195 216 194 216 0.98 4 13 2.3e-06 0.00045 22.3 3.1 1 23 229 251 229 251 0.98 5 13 0.0008 0.15 14.3 0.6 1 23 291 313 291 313 0.97 6 13 0.00019 0.036 16.3 0.4 2 23 320 341 319 341 0.94 7 13 7.4e-06 0.0014 20.7 4.0 2 23 348 369 347 369 0.97 8 13 0.0001 0.02 17.1 5.4 1 23 375 397 375 397 0.97 9 13 0.0014 0.28 13.5 1.3 1 23 405 427 405 427 0.98 10 13 8.2e-06 0.0016 20.6 0.5 2 23 434 455 433 455 0.96 11 13 5.5e-08 1.1e-05 27.4 0.4 1 23 461 483 461 483 0.98 12 13 0.00058 0.11 14.8 5.5 1 23 489 511 489 511 0.96 13 13 1.4e-05 0.0027 19.9 0.2 1 23 517 539 517 539 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAGGGTGTGATGCCAGATATCAAGTTGGGGGATGTTATATATCCTGAGCTGATCATGAAAGTGGAAGTCGCAGACAAAGACTCAATGACGaGCCCCCCAGAAGCAGTCAGCAACTGGGACATTGTCTGGAAAGATGACGGACACGCAGAGATTGTGTTGAAGCAAGAGGTGATTAATGACGACATCAGAGAATCTGACACTTTGGCCGCCACGATCCATCTCCTTTCTGAAGATTTCGACATTTCCCTGTCTACATTTTCATCCAATGGCGATGAGAGCAGTGCCTCACTAATAGACCCTGTTTCAAGTGAAGTATTTCAAGACAAGGTGCACCGGTTTAACAATCCACACAAAGTGAAGGGCCCCACCAAGACACGCCAGCTCCATATATCACCACGAAAGTTCTCCTGTGCTATATGCAACAAGAGCTACATGTCAAAGCGGGGCTTAAAAGAGCACCAGATGAAGCACTCTGGACTGAGGCCTTTCTCTTGTGACCAGTGTGGTCGCTCGTTCACCACGAGGAGGCTGCTGTGCTCTCACAGGCTGGTGCACGCGGCCGTACGTAGCGCGGTTCAGTGTGGCACGTGTCACAAGACGTATCTGAGCGCGCAAGCCCTGCGGACACACCAGCAGACCCACACGGGGCGCCTCCGGGAGCGTTGTCCGGGGGGCGGCTACCCCTGCCCCCATTGCAACAAGCGTTACTCCAGGAATGATAAGCTTCAGGACCACTTGAGGTTCCACAACGGGGACACCAGGGTGCGATGCCGCTTCTGCCGGGCTTATTTCCCTGACCATGAGGCTCGCAAACAGCATTACATCGACAAGCCTGGCCACGTCCGCCAGGAGAATGTCCAGGTGTTTGAGTGCCAGGACTGCGGCAAGAAGATCCGGGGCAAGAGAAACTATGAGACCCATGTACTGAACCATCGCGGGGAGAAGAACTTTCTTTGCGACGCGTGCGGTCAGAGGTTCGTCTCCTCTAAGCTCCTCAAATCTCACCAGGCGACTCATGCGACTCGGTCGCCGGTCGAGTGTCCGCTTTGCGAGAAATCTTTCTGCCACAAGACCAGTCTTCGGACACACCTTCGGATCCACAGGGGTGTGAAGATGTTCAAGTGTCACCTCTGCGAGAAGGCATTCAGTCAGAACTGTACACTTCGCAAGCACGTGCTTCTGCACCTCGGGAAGCCTATACACAAGTACGAGTGTCACATCTGCTCAAAGGGATTCCTGGGCCGTGACAAGATGAAAAGACACATGATAGTTCACACGGGTGAGCGGCCGGTCCAATGTGAACTGTGTCAGCGCAGCTTCGCTGACAAAAAGAGTCTGAAGACCCACATGCTGGCTCACACCGGGGAAATGCCCTATGAATGCGATGACTGTGGCCGCAAGTTTCGACAGCGAGGGAACCTCATTAAGCACATACAGCTCCATGCCGGGGAACTTCCGTTCGAGTGCCACGTATGCAAACATCGGTTCTCGCGCAAGGACAAGCTGAAACTCCATGAGGGCACACACCAAGGTCTGAGGCCCTATCCTTGTCCCGTGTGTGGCCGAGGATTCACTCAAAGTGGCTCTCGAAAACTACACCTGCGTCTTCATTCGGCCCGGGATCTGCGTCGGTATGGGCTGATAAAGACATCCAATGGGGCTGGTGAAAACTACCAGCAGAGGAATACAGTGGGCTGGGGAGAACTACCAGCAGATAAACACACCGGACTGGTGAGAACCATCAGCATGGTGATATTATGGGCTGATGAGAGCTACCAGCAGAGGGACACAGTGGGCTGGGTAAGAACTACCAGCATAGTAATATTATGGGCTGATGAGAGCTACCAGCAGATGAACACAGTGTACTGGGGAGAACTACCGACATTGGAACACCATGGGCTGGTGAGAACTACCAGCACAGGAAGATGGTGGGCTAGTAATGAGCACTACCAACATAGCATTGTGGGCTGA
- Protein Sequence
- MEEGVMPDIKLGDVIYPELIMKVEVADKDSMTSPPEAVSNWDIVWKDDGHAEIVLKQEVINDDIRESDTLAATIHLLSEDFDISLSTFSSNGDESSASLIDPVSSEVFQDKVHRFNNPHKVKGPTKTRQLHISPRKFSCAICNKSYMSKRGLKEHQMKHSGLRPFSCDQCGRSFTTRRLLCSHRLVHAAVRSAVQCGTCHKTYLSAQALRTHQQTHTGRLRERCPGGGYPCPHCNKRYSRNDKLQDHLRFHNGDTRVRCRFCRAYFPDHEARKQHYIDKPGHVRQENVQVFECQDCGKKIRGKRNYETHVLNHRGEKNFLCDACGQRFVSSKLLKSHQATHATRSPVECPLCEKSFCHKTSLRTHLRIHRGVKMFKCHLCEKAFSQNCTLRKHVLLHLGKPIHKYECHICSKGFLGRDKMKRHMIVHTGERPVQCELCQRSFADKKSLKTHMLAHTGEMPYECDDCGRKFRQRGNLIKHIQLHAGELPFECHVCKHRFSRKDKLKLHEGTHQGLRPYPCPVCGRGFTQSGSRKLHLRLHSARDLRRYGLIKTSNGAGENYQQRNTVGWGELPADKHTGLVRTISMVILWADESYQQRDTVGWVRTTSIVILWADESYQQMNTVYWGELPTLEHHGLVRTTSTGRWWASNEHYQHSIVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446823;
- 90% Identity
- iTF_01447763;
- 80% Identity
- -