Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010001259.1:130442-137209[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.6e-05 0.0054 19.2 1.3 1 23 130 152 130 152 0.98

2 14 0.00032 0.065 15.8 3.1 1 23 158 180 158 180 0.98

3 14 0.023 4.7 9.9 0.6 2 23 188 209 187 209 0.97

4 14 2.2e-05 0.0045 19.4 1.9 3 23 217 237 216 237 0.97

5 14 1.2e-05 0.0024 20.3 4.4 1 23 242 264 242 264 0.98

6 14 0.0004 0.083 15.5 0.4 1 23 304 326 304 326 0.97

7 14 0.00015 0.031 16.8 0.4 1 23 332 354 332 354 0.95

8 14 7.4e-06 0.0015 20.9 4.0 2 23 361 382 360 382 0.97

9 14 3e-05 0.0062 19.0 5.5 1 23 388 410 388 410 0.97

10 14 0.0027 0.56 12.9 3.4 1 23 418 440 418 440 0.98

11 14 3.8e-05 0.0078 18.7 1.6 2 23 447 468 446 468 0.95

12 14 1.7e-07 3.6e-05 26.0 0.4 1 23 474 496 474 496 0.97

13 14 0.00032 0.066 15.8 5.5 1 23 502 524 502 524 0.97

14 14 1.4e-05 0.0028 20.1 0.2 1 23 530 552 530 552 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.6e-05	0.0054	19.2	1.3	1	23	130	152	130	152	0.98
2	14	0.00032	0.065	15.8	3.1	1	23	158	180	158	180	0.98
3	14	0.023	4.7	9.9	0.6	2	23	188	209	187	209	0.97
4	14	2.2e-05	0.0045	19.4	1.9	3	23	217	237	216	237	0.97
5	14	1.2e-05	0.0024	20.3	4.4	1	23	242	264	242	264	0.98
6	14	0.0004	0.083	15.5	0.4	1	23	304	326	304	326	0.97
7	14	0.00015	0.031	16.8	0.4	1	23	332	354	332	354	0.95
8	14	7.4e-06	0.0015	20.9	4.0	2	23	361	382	360	382	0.97
9	14	3e-05	0.0062	19.0	5.5	1	23	388	410	388	410	0.97
10	14	0.0027	0.56	12.9	3.4	1	23	418	440	418	440	0.98
11	14	3.8e-05	0.0078	18.7	1.6	2	23	447	468	446	468	0.95
12	14	1.7e-07	3.6e-05	26.0	0.4	1	23	474	496	474	496	0.97
13	14	0.00032	0.066	15.8	5.5	1	23	502	524	502	524	0.97
14	14	1.4e-05	0.0028	20.1	0.2	1	23	530	552	530	552	0.98

Sequence Information

Coding Sequence: ATGGAGGAGGGTGTAATGCCAGATATCAAGTTGGGGGATGTTATCTATCCTGAGCTGATCATGAAAGTGGAAGTTGCAGACAAAGACTCAATGATGagCACCCCAGAAGCAGTCAACAACTGGGACATTGTATGGAAAGATGACGGACATGCAGAGATTGTGTTGAAACAAGAGGTGATTAATGACGACATTAAAGAATCTGACACTTTGGCTGCCACGATCCATCTCCTTTCTGAAGATTTCGACATTTCCCTGTCTACATTTTCATCCAATGGAGATGAGATCACTGCCTCGTTAATAGACCCCGTTTCGAGCGAAGTATTTCAAGACAAGGTGCACCGGGTTAACAAGCCACACAAAGTGAAGGGCCCCACCAAGACACGACAGTTCTCCTGTGATATATGCAACAAGAGCTACATGTCAAAGCGAGGTTTAACAGAGCACCAGATGAAGCACTCTGGACTGAAACCTTTCTCTTGCGACCAGTGCGGTCGCTTGTTCACCACGCGGAGGTTGCTGTGCTCTCACAGGCTGGTGCATGCGGTCATACGTAGCGCACTTCAGTGTGGCACGTGTTACAAGACGTATCTGAGCGCACAAGCCCTGCGGACACACCAGCAGTCCCACACGGGGCGCCTCCGGGAGCATTGTCAGGTGTGTGAGGCCACCTTCACTCAGAGGGGCTCTCTACAGCGCCACATGATGTCCCACGGGGAGGGCGGCTACCCCTGCCCCCATTGCAACAAGCGTTACTCCAGGAAGGATAAGTTTCAGGACCACTTGAGGTTCCACAACGGGGATACCAGGGTGCGATGCCGCTTCTGCCGGGCTTATTTCCCTGACCACGAGGCTCGCAAACAGCATTACATCGAAGAGCCTGGGCACGTCCGCCAGGAGAATGTCCGGGTGTTTGAGTGCCCGGACTGCGACAAGAGGATCCGGGGCAAGAGGAACTATGAGACCCACGTACTGAACCATCGCGGGGAGAAGAACTACCTTTGCGACGCGTGCGGCCAGAGGTTCGTCTCCTCTAAGCTCCTCAAATCTCACCAGGCGACTCATGCAATTCGCTCGCCGGTCGAGTGTCCGCTTTGCGAGAAATCTTTCTGCCACAAGACCAGTCTTCGGACACACCTTCGGATCCACAGGGGTGTGAAGATGTTCAAGTGCCACCTCTGCGACAAGGCGTTCAGTCAGAACTGTACACTACGCAAGCACGTGCTCCTGCACCTCGGGAAGCCTATACACAAGTACGAGTGCCACGTCTGCTCAAAGAGATTCCTGTTCCGCGACAAGATGAAAAGACACATGATAGTTCACACGGGTGAGCGGCCGATCCACTGTGAACTGTGTCAGCGCAGCTTCGCTGACAAAAAGAGTCTGAAGACCCACATGCTGGCTCACACCGGGGAAATGCCCTATGAATGTGATGACTGTGGCCGCAAGTTTCGACAGCGAGGGAACCTCATCAAACACGTACAACTCCACGCCGGGGAACTTCCGTTCGAGTGTCATATATGCAAACACCGATTCTCCCGCAAGGACAAGCTGAAACTTCACGAGGGCACACACCAAGGTCTGAGGCCCTATCCTTGTCCCGTGTGTGGCCGAGGTTTCACTCAAAGTGGTTCTCGAAAATTACACCTGCGTCTTCATTCGGCCCGGGATCTGCGTCGGTATGGGCTGATAAAGACATCCAATGGGGTAGTGCAGTCAATACCGAGCTGA
Protein Sequence: MEEGVMPDIKLGDVIYPELIMKVEVADKDSMMSTPEAVNNWDIVWKDDGHAEIVLKQEVINDDIKESDTLAATIHLLSEDFDISLSTFSSNGDEITASLIDPVSSEVFQDKVHRVNKPHKVKGPTKTRQFSCDICNKSYMSKRGLTEHQMKHSGLKPFSCDQCGRLFTTRRLLCSHRLVHAVIRSALQCGTCYKTYLSAQALRTHQQSHTGRLREHCQVCEATFTQRGSLQRHMMSHGEGGYPCPHCNKRYSRKDKFQDHLRFHNGDTRVRCRFCRAYFPDHEARKQHYIEEPGHVRQENVRVFECPDCDKRIRGKRNYETHVLNHRGEKNYLCDACGQRFVSSKLLKSHQATHAIRSPVECPLCEKSFCHKTSLRTHLRIHRGVKMFKCHLCDKAFSQNCTLRKHVLLHLGKPIHKYECHVCSKRFLFRDKMKRHMIVHTGERPIHCELCQRSFADKKSLKTHMLAHTGEMPYECDDCGRKFRQRGNLIKHVQLHAGELPFECHICKHRFSRKDKLKLHEGTHQGLRPYPCPVCGRGFTQSGSRKLHLRLHSARDLRRYGLIKTSNGVVQSIPS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446823;
90% Identity: iTF_01450808;
80% Identity: -