Tbar048944.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010008659.1:1-11225[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0029 62 6.0 0.0 17 47 239 270 230 275 0.81 2 8 0.001 22 7.5 0.0 21 44 272 295 269 305 0.89 3 8 0.086 1.9e+03 1.3 0.0 21 43 300 322 296 331 0.76 4 8 0.018 3.8e+02 3.5 0.0 21 44 328 351 322 355 0.91 5 8 0.00073 16 7.9 0.2 21 45 356 380 351 384 0.90 6 8 0.0083 1.8e+02 4.5 0.3 21 44 384 407 380 416 0.85 7 8 0.17 3.7e+03 0.3 0.0 22 44 413 435 408 440 0.86 8 8 0.0063 1.4e+02 4.9 0.1 18 43 437 462 431 471 0.83
Sequence Information
- Coding Sequence
- NNGGCCACAATGGATCTCACAACCCACAAATTTAAGGACAGTTTGCAGCAATTTAATAATCTGGATAAAAGTATTCCCTACACAAAGAGCGCTGAGACGATAAGACTGGAGCAAGAACTCCACGAAGCGATATTCGCAAGGATCAAGGAGGAAGATGTGGAGGAACTAACATGCGAAGTTTCTCCAGCAGTGGATGCCAGTAACTGGCAGAGCTCTGGCACTCTACGGGAGAATGCCTACACTCTGCCGACAAATGAGAAACCAGACGACAATGCAGCAGTTACCAGCATGCTGCCTTCTGAGCTGCTATCTCCGCACTTCCTAGCATTGAATTTTGGTCCCCAGCCCACGCCCACCACTCTGGGGGAGCTCTGCGGGAGAATAGAGACAGGCAAGTGGGATATGATGTTCCCCTGCAGCTTTTGTGATAATGTTTACACTAGACCAGAGTATCTCGGGAGGCACAACTGCAGGAGGAGTAAGATGTCAAAGGCCAAAAGTCGGCGCAAGAGGCCTGTTGAATTTATCTTCAACGAAAGCGAGCCTTCGAACAGCATCATCAGACCGGACAGGTTCTCTTGCAGCGTGTGTGGCAAGATGTTTGTTCGGCGCTACCATCTCACGGCGCATGAGAAGTACCACTCTAATGTCAAACCGTTTGAGTGTACGATGTGTGACTCAAAGTTCCACCGGAAAACGGACCTGACTGTGCATTCGCGCATTCACAGCGGAGAGAAGCCCTTCGAGTGCACGATATGTGGGGCGCGCTTCAATCAGAACTCTATACTGACCACGCATGTACGCATCCACACGGGTGAGAAACCGTTTGGCTGCACCGTGTGTGGGGAGAAGTTCCGCAAGAGCTCGTACTTGAAGAGACACTTCATGAACCATACAGGAGAGAGACCCCATGTCTGTTCCGTGTGTGGGGCTAAGTTCAGACTCAAATCTGTGTTCACCGCTCACTTCAGGATACACACGGGGGAAAAACCGTTTGCTTGTACATTTTGCGACTCGCGGTTCAAACAGAACTCTGACCTGAAGGCTCACATCAGGACGCATACGGGCGAGAAACCATACGCCTGTACCGTCTGTCCCGCGCGGTTCAGCCAGAGCTCAGCACTCAAGTCACATGTACGCATCCATACGGGCGAACGTCCGTACTGCTGCAATGTTTGCTCTCTGAAGTTCAGAGCAAAGTCAGATCTGAAACGACATTCATTCACTCATGTGGCGGACAAACCATTCAACTGCGGAGATTGCGGCGCTAAATTCAACCAGCTGGCGCATCTTAGGAACCATACACGCCGGCACACAGGTGAGAAGCCATTTTCTTGCCCACTTTGTGGTAAAAAGTTTGGTCGGTCGTCAACTCTTGCCAAGCACAAAGCAAGTCACAAGGAGATACGATACAACTGTTTGGAGTGCCCCGAGAAGTTCAAGACGTCAGTTGATCTTGTAAAACATATCAGGAGCGCTCACAAGTGA
- Protein Sequence
- XATMDLTTHKFKDSLQQFNNLDKSIPYTKSAETIRLEQELHEAIFARIKEEDVEELTCEVSPAVDASNWQSSGTLRENAYTLPTNEKPDDNAAVTSMLPSELLSPHFLALNFGPQPTPTTLGELCGRIETGKWDMMFPCSFCDNVYTRPEYLGRHNCRRSKMSKAKSRRKRPVEFIFNESEPSNSIIRPDRFSCSVCGKMFVRRYHLTAHEKYHSNVKPFECTMCDSKFHRKTDLTVHSRIHSGEKPFECTICGARFNQNSILTTHVRIHTGEKPFGCTVCGEKFRKSSYLKRHFMNHTGERPHVCSVCGAKFRLKSVFTAHFRIHTGEKPFACTFCDSRFKQNSDLKAHIRTHTGEKPYACTVCPARFSQSSALKSHVRIHTGERPYCCNVCSLKFRAKSDLKRHSFTHVADKPFNCGDCGAKFNQLAHLRNHTRRHTGEKPFSCPLCGKKFGRSSTLAKHKASHKEIRYNCLECPEKFKTSVDLVKHIRSAHK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450810;
- 90% Identity
- iTF_01449829; iTF_01450127; iTF_01445009; iTF_01449138; iTF_01448802; iTF_01450810; iTF_01451138;
- 80% Identity
- iTF_01445009;