Tshe041055.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010005161.1:14897-21860[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0015 74 6.0 0.0 17 47 228 259 222 264 0.80 2 8 0.00049 25 7.5 0.0 21 44 261 284 258 294 0.89 3 8 0.042 2.1e+03 1.3 0.0 21 43 289 311 285 320 0.76 4 8 0.0089 4.5e+02 3.5 0.0 21 44 317 340 313 344 0.90 5 8 0.00013 6.4 9.4 0.2 21 45 345 369 341 373 0.90 6 8 0.003 1.5e+02 5.0 0.1 21 44 373 396 369 405 0.85 7 8 0.084 4.3e+03 0.4 0.0 22 44 402 424 397 429 0.86 8 8 0.0031 1.6e+02 4.9 0.1 18 43 426 451 420 460 0.83
Sequence Information
- Coding Sequence
- ATGGATCTCACAACCCACAAATTTAAGGACACTTTGCAGCAGTTTAATAACCTGGATAAAAGTATTCCCTACACTAAGAGTGCAGAGACGATAAGACTGGAGCAAGAACTCCACGAAGCCATATTCGCAAGGATCAAGGAGGAAAATGTGGAGGAACTAACATGTGAAGTTTCTCCAGCAGTTGATGCCAGTAACTGGCAGAGTTCTGGCGCTCTTCGGGAGAATGAATACACTCTTCCAAATAGTGAGAAACCAGAAGACAGTGCAGCAGTTACCAGCATGCTACCTCCCGAGCTGTTATCTCCGCACTTCCTAGCATTGAACTTTGGTCCCCAGCCCACGCCCACCACTCTTGGGGAGCTTTGCGGGAGAATAGAGACAGGCAACTTTTGTGACAATGTCTACACCAGACCAGAGTATCTCGGGAGGCACAACTGCAGGAGGAGTAAAATGTCAAAGGCCAAAAGTCGACGCAAGAGGCCTGTTGAATTTATCTTCAACGAAAGTGAGCCTAGGAACAGCGTCATCAGACCGGACAGGTTCTCTTGTGGCGTGTGTGGCAAGATGTTTGTTCGGCGCTACCATCTCACGGCGCACGAGAAGTACCATTCTAATGTCAAACCGTTTGAGTGTACGATGTGTGACTCGAAGTTCCACCGGAAAACAGACCTGACTGTGCACTCGCGCATTCACAGCGGAGAGAAGCCATTTGAGTGTACAATATGTGGGGCGCGCTTTAATCAGAACTCTATACTAACCACGCACGTACGCATCCACACTGGCGAGAAACCGTTTGGCTGCACCGTGTGTGGGGAGAAGTTCCGCAAGAGCTCGTACTTGAAGAGACACTTCATGAACCACACAGGGGAGAGACCCCACGTGTGTTCCGTGTGTGGGGCCAAGTTCAGACTCAAATCTGTGTTTACCGCTCACTTTAGGATACACACGGGGGAAAAACCGTTTGCCTGTACATTTTGCGACTCGCGGTTCAAACAGAACTCTGACCTGAAGGCCCACATCAGGACGCATACGGGAGAGAAACCATATGCCTGTACCATCTGTCCCGCGCGTTTCAGCCAGAGCTCAGCACTCAAGTCACATGTACGCATCCATACAGGCGAACGTCCGTACAGCTGCAATGTTTGCTCTCTGAAGTTCAGAGCAAAGTCAGATCTGAAACGACATTCGTTCACTCATGTGGCGGACAAACCGTTCAACTGCGGAGATTGCGGCGCTAAATTTAACCAGCTGGCGCATCTTAGGAACCATACACGCCGGCACACAGGTGAGAAGCCATTTTCTTGCCCACTTTGTGGTAAAAAGTTTGGTAGGTCGTCAACTCTGGCCAAGCACAAAGCAAGTCACAAGGAGATACGATACAACTGTTTGGAGTGCCCCGAGAAGTTCAAGACGTCGGTTGATCTTATAAAACATATCAGGAGCGCTCACAAGTGA
- Protein Sequence
- MDLTTHKFKDTLQQFNNLDKSIPYTKSAETIRLEQELHEAIFARIKEENVEELTCEVSPAVDASNWQSSGALRENEYTLPNSEKPEDSAAVTSMLPPELLSPHFLALNFGPQPTPTTLGELCGRIETGNFCDNVYTRPEYLGRHNCRRSKMSKAKSRRKRPVEFIFNESEPRNSVIRPDRFSCGVCGKMFVRRYHLTAHEKYHSNVKPFECTMCDSKFHRKTDLTVHSRIHSGEKPFECTICGARFNQNSILTTHVRIHTGEKPFGCTVCGEKFRKSSYLKRHFMNHTGERPHVCSVCGAKFRLKSVFTAHFRIHTGEKPFACTFCDSRFKQNSDLKAHIRTHTGEKPYACTICPARFSQSSALKSHVRIHTGERPYSCNVCSLKFRAKSDLKRHSFTHVADKPFNCGDCGAKFNQLAHLRNHTRRHTGEKPFSCPLCGKKFGRSSTLAKHKASHKEIRYNCLECPEKFKTSVDLIKHIRSAHK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450810;
- 90% Identity
- iTF_01445326;
- 80% Identity
- iTF_01450810;