Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010008659.1:1-11225[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.023 5.1 9.9 1.1 1 19 137 155 137 158 0.93

2 12 1.7e-06 0.00039 22.9 2.6 1 23 192 214 192 214 0.97

3 12 0.00066 0.15 14.7 3.1 1 23 220 242 220 242 0.98

4 12 4.7e-05 0.011 18.4 0.2 1 23 248 270 248 270 0.98

5 12 3.4e-05 0.0075 18.8 1.7 3 23 278 298 276 298 0.96

6 12 0.0011 0.24 14.1 1.2 1 23 304 326 304 326 0.97

7 12 1.2e-06 0.00027 23.4 1.3 1 23 332 354 332 354 0.97

8 12 3.3e-06 0.00073 22.0 0.1 1 23 360 382 360 382 0.98

9 12 0.0022 0.5 13.1 4.6 1 23 388 410 388 410 0.96

10 12 9.2e-06 0.0021 20.6 1.8 1 23 416 438 416 438 0.98

11 12 1.9e-06 0.00043 22.7 0.6 1 23 444 466 444 466 0.97

12 12 5.5e-06 0.0012 21.3 0.2 1 23 471 494 471 494 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.023	5.1	9.9	1.1	1	19	137	155	137	158	0.93
2	12	1.7e-06	0.00039	22.9	2.6	1	23	192	214	192	214	0.97
3	12	0.00066	0.15	14.7	3.1	1	23	220	242	220	242	0.98
4	12	4.7e-05	0.011	18.4	0.2	1	23	248	270	248	270	0.98
5	12	3.4e-05	0.0075	18.8	1.7	3	23	278	298	276	298	0.96
6	12	0.0011	0.24	14.1	1.2	1	23	304	326	304	326	0.97
7	12	1.2e-06	0.00027	23.4	1.3	1	23	332	354	332	354	0.97
8	12	3.3e-06	0.00073	22.0	0.1	1	23	360	382	360	382	0.98
9	12	0.0022	0.5	13.1	4.6	1	23	388	410	388	410	0.96
10	12	9.2e-06	0.0021	20.6	1.8	1	23	416	438	416	438	0.98
11	12	1.9e-06	0.00043	22.7	0.6	1	23	444	466	444	466	0.97
12	12	5.5e-06	0.0012	21.3	0.2	1	23	471	494	471	494	0.97

Sequence Information

Coding Sequence: NNGGCCACAATGGATCTCACAACCCACAAATTTAAGGACAGTTTGCAGCAATTTAATAATCTGGATAAAAGTATTCCCTACACAAAGAGCGCTGAGACGATAAGACTGGAGCAAGAACTCCACGAAGCGATATTCGCAAGGATCAAGGAGGAAGATGTGGAGGAACTAACATGCGAAGTTTCTCCAGCAGTGGATGCCAGTAACTGGCAGAGCTCTGGCACTCTACGGGAGAATGCCTACACTCTGCCGACAAATGAGAAACCAGACGACAATGCAGCAGTTACCAGCATGCTGCCTTCTGAGCTGCTATCTCCGCACTTCCTAGCATTGAATTTTGGTCCCCAGCCCACGCCCACCACTCTGGGGGAGCTCTGCGGGAGAATAGAGACAGGCAAGTGGGATATGATGTTCCCCTGCAGCTTTTGTGATAATGTTTACACTAGACCAGAGTATCTCGGGAGGCACAACTGCAGGAGGAGTAAGATGTCAAAGGCCAAAAGTCGGCGCAAGAGGCCTGTTGAATTTATCTTCAACGAAAGCGAGCCTTCGAACAGCATCATCAGACCGGACAGGTTCTCTTGCAGCGTGTGTGGCAAGATGTTTGTTCGGCGCTACCATCTCACGGCGCATGAGAAGTACCACTCTAATGTCAAACCGTTTGAGTGTACGATGTGTGACTCAAAGTTCCACCGGAAAACGGACCTGACTGTGCATTCGCGCATTCACAGCGGAGAGAAGCCCTTCGAGTGCACGATATGTGGGGCGCGCTTCAATCAGAACTCTATACTGACCACGCATGTACGCATCCACACGGGTGAGAAACCGTTTGGCTGCACCGTGTGTGGGGAGAAGTTCCGCAAGAGCTCGTACTTGAAGAGACACTTCATGAACCATACAGGAGAGAGACCCCATGTCTGTTCCGTGTGTGGGGCTAAGTTCAGACTCAAATCTGTGTTCACCGCTCACTTCAGGATACACACGGGGGAAAAACCGTTTGCTTGTACATTTTGCGACTCGCGGTTCAAACAGAACTCTGACCTGAAGGCTCACATCAGGACGCATACGGGCGAGAAACCATACGCCTGTACCGTCTGTCCCGCGCGGTTCAGCCAGAGCTCAGCACTCAAGTCACATGTACGCATCCATACGGGCGAACGTCCGTACTGCTGCAATGTTTGCTCTCTGAAGTTCAGAGCAAAGTCAGATCTGAAACGACATTCATTCACTCATGTGGCGGACAAACCATTCAACTGCGGAGATTGCGGCGCTAAATTCAACCAGCTGGCGCATCTTAGGAACCATACACGCCGGCACACAGGTGAGAAGCCATTTTCTTGCCCACTTTGTGGTAAAAAGTTTGGTCGGTCGTCAACTCTTGCCAAGCACAAAGCAAGTCACAAGGAGATACGATACAACTGTTTGGAGTGCCCCGAGAAGTTCAAGACGTCAGTTGATCTTGTAAAACATATCAGGAGCGCTCACAAGTGA
Protein Sequence: XATMDLTTHKFKDSLQQFNNLDKSIPYTKSAETIRLEQELHEAIFARIKEEDVEELTCEVSPAVDASNWQSSGTLRENAYTLPTNEKPDDNAAVTSMLPSELLSPHFLALNFGPQPTPTTLGELCGRIETGKWDMMFPCSFCDNVYTRPEYLGRHNCRRSKMSKAKSRRKRPVEFIFNESEPSNSIIRPDRFSCSVCGKMFVRRYHLTAHEKYHSNVKPFECTMCDSKFHRKTDLTVHSRIHSGEKPFECTICGARFNQNSILTTHVRIHTGEKPFGCTVCGEKFRKSSYLKRHFMNHTGERPHVCSVCGAKFRLKSVFTAHFRIHTGEKPFACTFCDSRFKQNSDLKAHIRTHTGEKPYACTVCPARFSQSSALKSHVRIHTGERPYCCNVCSLKFRAKSDLKRHSFTHVADKPFNCGDCGAKFNQLAHLRNHTRRHTGEKPFSCPLCGKKFGRSSTLAKHKASHKEIRYNCLECPEKFKTSVDLVKHIRSAHK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450810;
90% Identity: iTF_01445326;
80% Identity: iTF_01445326;