Tpod025934.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000007.1:48828413-48837139[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0028 46 6.0 0.0 17 47 236 267 227 272 0.81 2 8 0.00099 16 7.5 0.0 21 44 269 292 266 302 0.89 3 8 0.12 1.9e+03 0.8 0.1 21 36 297 312 293 327 0.80 4 8 0.017 2.8e+02 3.5 0.0 21 44 325 348 319 352 0.91 5 8 0.00072 12 7.9 0.2 21 45 353 377 348 381 0.90 6 8 0.0082 1.3e+02 4.6 0.3 21 44 381 404 377 413 0.85 7 8 0.2 3.2e+03 0.1 0.0 22 44 410 432 407 436 0.86 8 8 0.0063 1e+02 4.9 0.1 18 43 434 459 428 468 0.83
Sequence Information
- Coding Sequence
- ATGGATCTCACAACCCACAAATATAAGGACACTTTGCAGCAATTTAATAATCTGGATAAAAGTATTCCCTACACAAAGAGCGCTGAGACGATAAGACTGGAGCAAGAACTCCACGAAGCGATATTCGCAAGGATCAAGGAGGAAGATGTGGAGGAACTAACATGCGAAGTTTCTCCAGCAGTGGATGCCAGTAACTGGCAGAGCTCTGGCACTCTACGGGAGAATGCCTACACTCTGCCGACAAATGAGAAACCAGACGACAATGCAGCAGTTACCAGCATGCTACCTTCTGAGCTGTTATCTCCGCACTTCCTAGCATTGAACTTTGGTCCCCAGCCCACGCCCACCACTCTGGGGGAGCTCTGCGGGAGAATAGAGACAGGCAAGTGGGATATGATGTTCCCCTGCAGCTTTTGTGATAATGTTTACACTAGACCAGAGTATCTCGGGAGGCACAACTGCAGGAGGAGTAAGATGTCAAAGGCAAAAAGTCGGCGCAAGAGGCCTGTTGAATTTATCTTCAACGAAAGCGAGCCTTCGAACAGCGTCATCAGACCGGACAGGTTCTCTTGCAGCGTGTGTGGCAAGATGTTTGTTCGGCGCTACCATCTCACGGCGCATGAGAAGTACCACTCTAATGTCAAACCGTTTGAGTGTACGATGTGTGACTCAAAGTTCCACCGGAAAACGGACCTGACTGTGCACTCGCGCATTCACAGCGGGGAGAAGCCCTTTGAGTGCACGATATGTGGGGCGCGCTTCAATCAGAACTCTATACTGACCACGCACGTACGCATCCATACGGGTGAGAAACCGTTTGGCTGCACCGTGTGTGGGGAGAAGTTCCGCAAGAGCTCGTACTTGAAGAGACACTTCATGAACCATACAGGAGAGAGACCCCATGTCTGTTCCGTGTGTGGGGCCAGGTTCAGGCTCAAATCTGTGTTCACCGCTCACTTCAGGATACACACGGGGGAAAAACCGTTTGCTTGTACCTTTTGCGACTCGCGGTTCAAACAGAACTCTGACCTGAAGGCTCACATCAGGACGCATACGGGCGAGAAGCCGTACGCCTGCACCGTCTGTCCCGCGCGGTTCAGCCAGAGCTCGGCACTCAAGTCACATGTACGCATCCATACGGGCGAACGTCCGTACTGCTGCAATGTTTGCTCTCTCAAGTTCAGAGCAAAGTCAGATCTGAAACGACATTCATTCACTCATGTGGCGGACAAACCATTCAACTGCGGAGATTGCGGCGCTAAATTCAACCAGCTGGCGCATCTTAGGAACCATACACGCCGGCACACAGGCGAGAAGCCATTTTCTTGCCCACTTTGTGGTAAAAAGTTTGGTCGGTCGTCAACTCTTGCCAAGCACAAAGCAAGTCACAAGGAGATACGATACAACTGTTTGGAGTGCCCCGAGAAGTTCAAGACGTCAATTGATCTTGTAAAACATATCAGGAGCGCTCACAAGTGA
- Protein Sequence
- MDLTTHKYKDTLQQFNNLDKSIPYTKSAETIRLEQELHEAIFARIKEEDVEELTCEVSPAVDASNWQSSGTLRENAYTLPTNEKPDDNAAVTSMLPSELLSPHFLALNFGPQPTPTTLGELCGRIETGKWDMMFPCSFCDNVYTRPEYLGRHNCRRSKMSKAKSRRKRPVEFIFNESEPSNSVIRPDRFSCSVCGKMFVRRYHLTAHEKYHSNVKPFECTMCDSKFHRKTDLTVHSRIHSGEKPFECTICGARFNQNSILTTHVRIHTGEKPFGCTVCGEKFRKSSYLKRHFMNHTGERPHVCSVCGARFRLKSVFTAHFRIHTGEKPFACTFCDSRFKQNSDLKAHIRTHTGEKPYACTVCPARFSQSSALKSHVRIHTGERPYCCNVCSLKFRAKSDLKRHSFTHVADKPFNCGDCGAKFNQLAHLRNHTRRHTGEKPFSCPLCGKKFGRSSTLAKHKASHKEIRYNCLECPEKFKTSIDLVKHIRSAHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450810;
- 90% Identity
- iTF_01445326;
- 80% Identity
- iTF_01449829;