Tcit028318.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tiliacea citrago
Gene Symbol
-
Assembly
GCA_963921375.1
Location
OY992795.1:23425373-23434303[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.001 0.15 14.0 0.8 1 23 347 370 347 370 0.94
2 12 0.0047 0.7 11.9 2.4 1 19 380 398 380 402 0.92
3 12 2.6e-05 0.0039 19.0 3.7 2 23 408 429 407 429 0.97
4 12 0.0021 0.31 13.0 2.1 1 23 433 456 433 456 0.94
5 12 0.0031 0.46 12.5 0.9 1 23 459 481 459 481 0.97
6 12 0.0017 0.25 13.3 0.3 3 23 559 579 558 579 0.96
7 12 0.14 21 7.3 0.3 2 23 599 621 598 621 0.96
8 12 1.1e-06 0.00016 23.4 4.1 1 23 627 649 627 649 0.98
9 12 0.00041 0.061 15.2 2.6 1 23 654 676 654 676 0.98
10 12 0.0026 0.38 12.7 5.2 2 21 683 702 682 705 0.95
11 12 8.5 1.3e+03 1.7 1.5 1 19 713 731 713 732 0.86
12 12 2 3e+02 3.6 2.8 3 19 745 761 744 766 0.93

Sequence Information

Coding Sequence
ATGGAAGGCGAAGAGTGTATCTCGAATTCGGAAGTGCCTCACCCAATACTGTTCATACCAAGAGTGTGTACGCCATTGGTGATGACCAGTGAAATTTCAGAACGTTTGTTATTACACTTGAACATTTCAACACCAGACCCAGAAGGCAATGAGATTGTCATATACAAGGGTGTCTGTGATGTAAAGATCATGGAAGGAAGAGATATCAACATCAGGTACACATCACCAAATAGTTGCTCAAGCATTGACAACATAAATGTGATTCTGACTGAAGCTAATCAGATAACAATACCTGCTTACAATGATTCTCAAGTCTGGATCGACCCGGCTAGGAGCCCATTTGTCTACAACCGTTGTGACTCACTGCCTCTGGAGACTTACACCATACATGAGAGTAATGACAACCACATTACATTCGAGCAGCAcaacacatacataacacaaaATGTGTATAATTACAATGAAGCTATTCGTTACTCACCTGTCTGTGAGGAACAAAAGACAGTCAAGAAAATACAAGAAAATGTTCGGAATTCAGACCATAACTTGTATGAGGATGAAGAGCTTGAATGTGGGGTGTTTTTGTCTCAGTTGTCTGAAGAGATCAATGAGAAAGATGCTAGGGCACGAGACGAGAGGAAGTTTGTTGGTCTGCAGACGGACAATGGAGCATTGAAACAGCTGATGTCTACAAATATACAGTCTATGTCGAGGCAACAGAAGACTATATTGTTTTTAGGTCATGACTCAGGGTCCGGACAGACAGTACACAATATTGCCATCAATGATCCTTCACTGGAGTGCGTTGGAGCTGGTGAAGTGGAGAGTGAATTTACTATAGGGTATTGGGGGTGGATGTCGTCCATGGGACCGGCAGAATTAGTAGAAGCAAGTGGGCGCATGAACGGCCAGACCTATCTGGAAATTTTGCAAGATGTTATGGTGCCAACAGTGCAAGTTGCTTACCCAGAAGGACAGATctattttgttcaaaataaatgtgacTCCAACATCACAAACAATCCACGCGCGAAAAAATACCAGTGCAACAAATGCAAACAGATATTTGACCAACTGTCTGCCTTCAAACTGCACGTGGTGAGCAGCCACCGGCGCTCCGTCTCTGGCAACCTCAAGTTCATGTGCACAGAATGCGGGAAAAGCTTGAAGAACCAAGAAAAGTTTGAGCAACACTGCCTCGGTCACGGCGACCCAGATCTAGAATGTAACAAGTGCCACAAAGTCTTCGCGTCAAAATTCACCTTACGCAATCACCGTAAGATACATTCTCGAATGTTCCCCTGCAGCTACTGTGCAAAGAGTTTTACAACGATGCAGGAATTACACGCACATTCATCGAAAACTCACTTCAAATTTATGTGCGAATCGTGTTCGTTTGTCTGCGAAACTTCATCGGAGTTGATGGCTCACTTAAAAGGACATAAGAGCCGCTCGAACTCTTCGCAGAGTTCCAGTGAATCTGAATTCGCTGAAGGCGTGTTTGAGGGGAGTTTCGAGGGGTTAAGTGATATTTCGGTGGGAGAAGAGTTAGTCAAACAAGAGGAGGAGAAACATGTACAAACTCCTGACTCGGTTATCGCGAAGGTGATGTCCAACAATATATTTCAATCTCAATTCAAGACGAATAAGACACAGAGAAAGTATAACAAGaACTGCGAAGTGTGTCTAAAAAAGTTCGACCGGATCGGTGACCTTAAGAGACATCTCATCGAGCACGTGATAAGGAGCACCCTGGCCAAGAACCCAGTGAACAAGTTCGGGGTCCTCAACATCCGCTGCGAGATCTGCCAGGAACgggtattttctaaaattgatcGATACAAAGCCCACTTGAGGGAACACGCAAAGCTCACTCTTTACAAGTGTACCTTTTGCGACAAATCCTTTAGCGACTCCAGCAACTTTTCTAAGCACAAAAAAATCCATGGCACTACCTACTTCCAATGTGACATGTGCCAACGTAAGTTCAATTCCAAGAAAATGATAACTCAGCATATGGAGTACCACAACAAAACTCAGCCTATGAAATGTCAATATTGCGAGAAAGTGTTCCATTTTGAGTCTATGCTGAATAAGCATATGAGATGCTCGCATACCAAGGTAACGACGAGCAGATTCAGGTGCAGGTTCTGCCGTCAGTACTTCAGAAGTTTGAAGGAGAAGTGGGACCATGAATGGGCATCTCATAATGCTAGGAAGGTGATTGTGGACTGCCTGTTCTGTGAGTCCAGGTTTAGGAAATTTTCTGAGTTAAAGAGACATTGTATAGAGGAACATAATACCGTCATACCTCCAGCAAATAAATCGCTAAGATGGAGGTATACGAAGTTGAGAATCATAGAAGATCAGTAG
Protein Sequence
MEGEECISNSEVPHPILFIPRVCTPLVMTSEISERLLLHLNISTPDPEGNEIVIYKGVCDVKIMEGRDINIRYTSPNSCSSIDNINVILTEANQITIPAYNDSQVWIDPARSPFVYNRCDSLPLETYTIHESNDNHITFEQHNTYITQNVYNYNEAIRYSPVCEEQKTVKKIQENVRNSDHNLYEDEELECGVFLSQLSEEINEKDARARDERKFVGLQTDNGALKQLMSTNIQSMSRQQKTILFLGHDSGSGQTVHNIAINDPSLECVGAGEVESEFTIGYWGWMSSMGPAELVEASGRMNGQTYLEILQDVMVPTVQVAYPEGQIYFVQNKCDSNITNNPRAKKYQCNKCKQIFDQLSAFKLHVVSSHRRSVSGNLKFMCTECGKSLKNQEKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHRKIHSRMFPCSYCAKSFTTMQELHAHSSKTHFKFMCESCSFVCETSSELMAHLKGHKSRSNSSQSSSESEFAEGVFEGSFEGLSDISVGEELVKQEEEKHVQTPDSVIAKVMSNNIFQSQFKTNKTQRKYNKNCEVCLKKFDRIGDLKRHLIEHVIRSTLAKNPVNKFGVLNIRCEICQERVFSKIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDMCQRKFNSKKMITQHMEYHNKTQPMKCQYCEKVFHFESMLNKHMRCSHTKVTTSRFRCRFCRQYFRSLKEKWDHEWASHNARKVIVDCLFCESRFRKFSELKRHCIEEHNTVIPPANKSLRWRYTKLRIIEDQ