Alit026535.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrochola litura
Gene Symbol
-
Assembly
GCA_949152395.1
Location
OX424506.1:22210901-22216982[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0011 0.13 14.1 0.8 1 23 295 318 295 318 0.94
2 12 0.0051 0.63 12.0 2.4 1 19 328 346 328 350 0.92
3 12 2.9e-05 0.0036 19.1 3.7 2 23 356 377 355 377 0.97
4 12 0.0014 0.18 13.8 1.5 1 23 381 404 381 404 0.94
5 12 0.0068 0.85 11.6 0.4 1 23 407 429 407 429 0.96
6 12 0.001 0.13 14.2 0.4 2 23 507 528 506 528 0.96
7 12 0.15 19 7.4 0.3 2 23 548 570 547 570 0.96
8 12 1.1e-06 0.00014 23.5 4.1 1 23 576 598 576 598 0.98
9 12 0.00044 0.055 15.3 2.6 1 23 603 625 603 625 0.98
10 12 0.0028 0.35 12.8 5.2 2 21 632 651 631 654 0.95
11 12 9.2 1.1e+03 1.8 1.5 1 19 662 680 662 681 0.86
12 12 0.92 1.1e+02 4.9 3.0 3 19 694 710 693 715 0.93

Sequence Information

Coding Sequence
ATGGAAGGCGAAGAGTGTAACTCGAATTCGGAAGTGCCTCACCCAATACTGTTCATACCAAGAGTGTGTACACCGTTGGTCACCACCAGTGAAATGTCAGAACGTTTGTTATTACACTTGAACATCTCAACACCAGACCCAGAAGGCAATGAGATTGCCATATACAATGGTGTCTGTGATGTAAAGATTATGGAAGGAAGGGATATCAACATCAGGTACGCATCACCAAATAGTTTCTCAAGCATTGACAACATAAATGTGATTCTGACTGAAGCGAATCAGATAACAATACCTGCTTACAATGATTCTCAAGTTTGGATTGACCCAGCTAGGAGCCCATTTGTCTACAACCGTTGTGACTCACCGCCTCTGGAGACTTACACCATACATGAGAGAAATGACAATCACATAACATTTGAGCAGCACAACACATACATAACACAAAATGTGTATAATTATAACGAAGCTATTCGGTACTCTCCTGTATGTGAGGAACAAAAGTCAGTCAAGAAGATACAAGAAAATGTCCGGAATTCAGACATCCAAAACTTGTATGAGGACGAGGAGCTTGAATGTGGGGTGTTTCTGTCTCAGTTGTCTGAAGAGATCAATGAGAAAGATGCCAGGGCACGAGATGAGAGGAAGTTTGTTGGTCTGCAGACGGACAATGGAGCGTTGAAACAGCTGATGTCTACAAATATACAGTCTATGTCGAGGCAGCAGAAGACTATATTGTTTTTAGGTCATGACTCTGGGTCCGGACAGACGGTACAGAATATTGCCATCAATGATTCTTCCCTGGAGTGCGTTGGAGCTGGTGAAGTGGAGAGTGAATTTACTATAGGAGACTCCAACAATACAAACAATCCACGCGCGAAAAAATACCAGTGCAATAAATGCAAACAGATATTTGACCAACTATCTGCCTTTAAACTGCACGTGGTCAGCAGCCACCGGCGCTCCACCACCGGCAACCTCAAGTTCATGTGCACAGAATGCGGGAAGAGCTTGAAAAACCAAGAAAAGTTTGAGCAACACTGCCTCGGTCACGGCGACCCAGATCTAGAATGTAACAAGTGCCACAAAGTCTTCGCGTCAAAATTCACCTTGCGCAATCACCGTAAAATACATTCTCGAATGTTCCCCTGCAGCTACTGTGCAAAGAGTTTTACCACGATGCAGGAATTGCACGCACATTCATCAAAAATTCACTTCAAATTTATGTGCGAAGCGTGTTCGTTTGTTTGCGAAACGTCATCTGAGTTGACAGCTCACCAAGTAGTTCATAATAAGAGCCACTCGAACTTTTCGACGAGCTCCAGTGAATCTGAATTCGCTGAAGGCGTGTTTGAGGGCAGTTTCGAGGGGCTAAGTGATATTTCGGTGGCAGAAGAAATAGTCAAGCAAGAGGAGAAGGAACATCTACAAACTCCTGATTCGGTCATCGCGAAGGTGATGTCCAACAATATATTTCAATCTCAATCCAAGATGAACAAGACACAGAGGAAATATAACAAGaCCTGTGAAGTGTGTCTAAAAAAGTTCGACCGGATCGGTGACCTGAAGAGGCATCTCATCGAACACGTGATAAGGAGTACCCTGGCCAAGAACCCAGTGAACAAGTTCGGGGTCCTCAACATCCGCTGCGAGATCTGTCAGGAACGGGTATTTTCAAAAATAGATAGATACAAAGCCCATTTGAGGGAACACGCGAAGCTCACTCTCTACAAGTGTACCTTTTGCGATAAATCCTTCAGCGACTCCAGCAACTTTTCTAAGCACAAAAAAATCCACGGCACCACCTACTTCCAATGTGACATGTGCCAGCGCAAGTTCAATTCCAAGAAAATGATCACTCAGCATATGGAGTACCACAACAAAACTCAGCCTATGAAATGTCAATATTGCGAGAAAGTGTTCCATTTTGAGTCCATGCTGAATAAGCATATGAGATGCTCGCATACCAAGGTAACGACGAGCAGATTCAGGTGTAGGTTCTGCCGGCAGTACTTCAGAAGTTTGAAGGAAAAGTGGGACCACGAATGGGCAGCTCATAATGCTAGGAAGGTGATTGTGGACTGCCGGTTCTGTGAGTCCAGGTTTAGGAAGTATTCAGAGTTAAAGAGACATTGTATAGAGGAACATGATACTGTCATACCTCCAGCTAAAAGATCGCCAAGATGGAAGTATAAGAAGTTGAGAATGATTGAAGATCAGTAA
Protein Sequence
MEGEECNSNSEVPHPILFIPRVCTPLVTTSEMSERLLLHLNISTPDPEGNEIAIYNGVCDVKIMEGRDINIRYASPNSFSSIDNINVILTEANQITIPAYNDSQVWIDPARSPFVYNRCDSPPLETYTIHERNDNHITFEQHNTYITQNVYNYNEAIRYSPVCEEQKSVKKIQENVRNSDIQNLYEDEELECGVFLSQLSEEINEKDARARDERKFVGLQTDNGALKQLMSTNIQSMSRQQKTILFLGHDSGSGQTVQNIAINDSSLECVGAGEVESEFTIGDSNNTNNPRAKKYQCNKCKQIFDQLSAFKLHVVSSHRRSTTGNLKFMCTECGKSLKNQEKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHRKIHSRMFPCSYCAKSFTTMQELHAHSSKIHFKFMCEACSFVCETSSELTAHQVVHNKSHSNFSTSSSESEFAEGVFEGSFEGLSDISVAEEIVKQEEKEHLQTPDSVIAKVMSNNIFQSQSKMNKTQRKYNKTCEVCLKKFDRIGDLKRHLIEHVIRSTLAKNPVNKFGVLNIRCEICQERVFSKIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDMCQRKFNSKKMITQHMEYHNKTQPMKCQYCEKVFHFESMLNKHMRCSHTKVTTSRFRCRFCRQYFRSLKEKWDHEWAAHNARKVIVDCRFCESRFRKYSELKRHCIEEHDTVIPPAKRSPRWKYKKLRMIEDQ