Basic Information

Insect: Gortyna flavago
Gene Symbol: -
Assembly: GCA_963669345.1
Location: OY770138.1:16654001-16658248[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.001 0.084 14.1 0.8 1 23 294 317 294 317 0.94

2 12 0.0049 0.39 12.0 2.4 1 19 327 345 327 349 0.92

3 12 1.2e-05 0.00098 20.2 3.0 2 23 355 376 354 376 0.97

4 12 0.0013 0.11 13.8 1.5 1 23 380 403 380 403 0.94

5 12 0.0001 0.0083 17.3 1.5 1 23 406 428 406 428 0.98

6 12 0.00099 0.08 14.2 0.4 2 23 505 526 504 526 0.96

7 12 0.15 12 7.4 0.3 2 23 546 568 545 568 0.96

8 12 1.1e-06 8.8e-05 23.5 4.1 1 23 574 596 574 596 0.98

9 12 0.00043 0.035 15.3 2.6 1 23 601 623 601 623 0.98

10 12 0.00078 0.063 14.5 5.3 2 21 630 649 629 652 0.95

11 12 8.8 7.1e+02 1.8 1.5 1 19 660 678 660 679 0.86

12 12 0.81 66 5.0 2.6 3 19 692 708 691 713 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.001	0.084	14.1	0.8	1	23	294	317	294	317	0.94
2	12	0.0049	0.39	12.0	2.4	1	19	327	345	327	349	0.92
3	12	1.2e-05	0.00098	20.2	3.0	2	23	355	376	354	376	0.97
4	12	0.0013	0.11	13.8	1.5	1	23	380	403	380	403	0.94
5	12	0.0001	0.0083	17.3	1.5	1	23	406	428	406	428	0.98
6	12	0.00099	0.08	14.2	0.4	2	23	505	526	504	526	0.96
7	12	0.15	12	7.4	0.3	2	23	546	568	545	568	0.96
8	12	1.1e-06	8.8e-05	23.5	4.1	1	23	574	596	574	596	0.98
9	12	0.00043	0.035	15.3	2.6	1	23	601	623	601	623	0.98
10	12	0.00078	0.063	14.5	5.3	2	21	630	649	629	652	0.95
11	12	8.8	7.1e+02	1.8	1.5	1	19	660	678	660	679	0.86
12	12	0.81	66	5.0	2.6	3	19	692	708	691	713	0.90

Sequence Information

Coding Sequence: ATGGAAGGCGAAGAGTGTAACTCGAATTCGGAAGTGCCTCACCCAGTACTGTTCATACCAAGAGTGTGCACACCGTTGGTGACCACCAGCGAAATAACAGAACGTTTGTTATTACACTTGAACATCTCAACACCAGACCCTGAAGGAAATGAAATTGCCATATACAAGGGTGTCTGTGACGTAAAGATCATGGAAGGAAGAGATATCAACATCAAGTACGCATCACCAAATAGTTTCTCAAGCATTGACAACATAAATGTGATTCTGACTGAAGCTAATCAGATAACAATACCTGCTTACAACGATTCTCAAGTCTGGATTGACCCGGCTAGGAGCCCATTTGTCTACAACCGTTGTGATTCACCAGCCCTGGAGACATACACTATACATGAGAGTAATGACAACCACATTACGTTCGAGCAGCACAACACATACATAACACAGAATGTGTATAATTACAATGAAGCTATTCGGTACCCACCTGTCTCCGAGGAACAGAAGACAGTCAGGAAGATACAAGATAATCGAAATTCAGACGTCCATAACTTGTATGAGGACGAAGAGCTTGAATGTGGGGTGTTTCTGTCTCAGCTGTCTGAAGAGATCAACGAGAAAGATGCAAGAGCAAGAGACGAGAGGAAGTTTGTTGATCTGCAGACGGACAATGGAGCCTTGAAACAGCTGATGTCTACAAATATACAGTCTGTGTCGAGGCAGCAGAAGACTATATTGTTTTTAGGTCATGACTCTGGGTCCGGACAGACTGTACAGAATATTGCCATTAATGATCCTTCTCTGGAGTGCGTTGGAGCTGGTGAAGTGGagagtgaatttactattgaGGACTCCAACATTACAGACAATCCACGCGCGAAAAAATACCAGTGCAACAAATGCAAACAAATATTTGACCAACTATCTGCCTTCAAACTGCACGTGGTCAGCAGCCACCGGCGCTCCGTCTCCGGCAACCTAAAGTTCATGTGCACAGAATGTGGGAAAAGCTTAAAAAACCAAGAAAAGTTTGAGCAACACTGCCTCGGTCACGGCGACCCAGATCTAGAATGTAACAAGTGCCACAAAGTCTTCGCGTCAAAATTCACCTTACGCAATCACCTTAAGATACATTCTCGAATGTTCCCTTGCAGCTACTGTGCAAAGAGTTTTACAACCATGCAAGAATTGCACGCACATTCATCAAAAATTCACTTCAAATTTATGTGCGAAGAGTGCTCGTTTGTTTGCGAAACTTCATCAGAGTTGACGGCTCACCAAAAATCTCACAGGAGCCGCTCGAACTCTTCGAACAGCTCCAGTGAATCTGAATTCGCTGAAGGCGTGTTTGAGGGGAGTTTCGAGGGGCTAAGTGATATTTCGGTGGCAGAAGAGTTAGTCAAACAAGAGGAAGTGGAACATCTCCAAACTCCTGACTTGGTTATCGCGAAGGTGATGTCCAACAATATATTTCAATCTCAATCCAAGACGAACAAGACACAGAGGAAGTATAACAAGaCATGCGAAGTGTGCCTAAAAAAATTCGACCGAATCGGTGACCTCAAAAGGCATCTCATCGAACACATGATAAGGAGCACCCTGGCCAAGAATCCAGTGAACAAGTTCGGGGTCCTCAACATCCGCTGCGAGATCTGTCAGGAGCGGGTATTTTCAAAGATCGATAGATACAAAGCCCATTTGAGGGAGCACGCGAAACTCACTCTCTACAAGTGTACCTTTTGCGACAAGTCCTTCAGCGACTCCAGCAACTTTTCTAAGCACAAAAAAATCCACGGAACTACCTACTTCCAATGTGACATGTGCCAACGTAAGTTCAACTCCAAGAAAATGATCACTCAACATATGGAGTACCACAACAAAACCCAGCCTATGAAATGTCAGTATTGCGACAAAGTGTTCCATTTTGAGTCTATGCTGAATAAGCATATGAGATGCTCGCACACCAAGGTAACGACGAGCAGGTTCAGGTGTAGGTTCTGCCGTCAGTACTTCAGAAGTTTGAAGGAGAAGTGGGACCATGAATGGTCAGCTCATAACGCTAGGAAGGTGATTGTGGACTGCTTGTTTTGTGAGTCCAGATTTAGGAAATATTCGGAGTTAAAGAGGCATTGTATGGAGGTACATGATACCGTCATACCTCCAGCTAAAAAATCGCTAAGATGGAAGTATACGAAGTTGAGAATAATTGAAGATCAGTAG
Protein Sequence: MEGEECNSNSEVPHPVLFIPRVCTPLVTTSEITERLLLHLNISTPDPEGNEIAIYKGVCDVKIMEGRDINIKYASPNSFSSIDNINVILTEANQITIPAYNDSQVWIDPARSPFVYNRCDSPALETYTIHESNDNHITFEQHNTYITQNVYNYNEAIRYPPVSEEQKTVRKIQDNRNSDVHNLYEDEELECGVFLSQLSEEINEKDARARDERKFVDLQTDNGALKQLMSTNIQSVSRQQKTILFLGHDSGSGQTVQNIAINDPSLECVGAGEVESEFTIEDSNITDNPRAKKYQCNKCKQIFDQLSAFKLHVVSSHRRSVSGNLKFMCTECGKSLKNQEKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHLKIHSRMFPCSYCAKSFTTMQELHAHSSKIHFKFMCEECSFVCETSSELTAHQKSHRSRSNSSNSSSESEFAEGVFEGSFEGLSDISVAEELVKQEEVEHLQTPDLVIAKVMSNNIFQSQSKTNKTQRKYNKTCEVCLKKFDRIGDLKRHLIEHMIRSTLAKNPVNKFGVLNIRCEICQERVFSKIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDMCQRKFNSKKMITQHMEYHNKTQPMKCQYCDKVFHFESMLNKHMRCSHTKVTTSRFRCRFCRQYFRSLKEKWDHEWSAHNARKVIVDCLFCESRFRKYSELKRHCMEVHDTVIPPAKKSLRWKYTKLRIIEDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01441402;
90% Identity: iTF_00037191;
80% Identity: -