Basic Information

Insect: Brachylomia viminalis
Gene Symbol: -
Assembly: GCA_937001565.2
Location: CAKZJP020000083.1:805341-813157[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0011 0.15 14.1 0.8 1 23 295 318 295 318 0.94

2 12 0.019 2.7 10.2 2.4 1 19 328 346 328 350 0.92

3 12 2.8e-05 0.004 19.1 3.7 2 23 356 377 355 377 0.97

4 12 0.0052 0.74 12.0 1.4 1 23 381 404 381 404 0.94

5 12 0.00013 0.019 17.0 1.5 1 23 407 429 407 429 0.97

6 12 0.001 0.14 14.2 0.4 2 23 507 528 506 528 0.96

7 12 0.15 21 7.4 0.3 2 23 548 570 547 570 0.96

8 12 1.1e-06 0.00016 23.5 4.1 1 23 576 598 576 598 0.98

9 12 0.00044 0.062 15.3 2.6 1 23 603 625 603 625 0.98

10 12 0.0027 0.39 12.8 5.2 2 21 632 651 631 654 0.95

11 12 6.5 9.2e+02 2.2 1.2 1 19 662 680 662 685 0.87

12 12 0.3 42 6.4 2.9 3 19 694 710 693 715 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0011	0.15	14.1	0.8	1	23	295	318	295	318	0.94
2	12	0.019	2.7	10.2	2.4	1	19	328	346	328	350	0.92
3	12	2.8e-05	0.004	19.1	3.7	2	23	356	377	355	377	0.97
4	12	0.0052	0.74	12.0	1.4	1	23	381	404	381	404	0.94
5	12	0.00013	0.019	17.0	1.5	1	23	407	429	407	429	0.97
6	12	0.001	0.14	14.2	0.4	2	23	507	528	506	528	0.96
7	12	0.15	21	7.4	0.3	2	23	548	570	547	570	0.96
8	12	1.1e-06	0.00016	23.5	4.1	1	23	576	598	576	598	0.98
9	12	0.00044	0.062	15.3	2.6	1	23	603	625	603	625	0.98
10	12	0.0027	0.39	12.8	5.2	2	21	632	651	631	654	0.95
11	12	6.5	9.2e+02	2.2	1.2	1	19	662	680	662	685	0.87
12	12	0.3	42	6.4	2.9	3	19	694	710	693	715	0.90

Sequence Information

Coding Sequence: atggaaggcgaagagtgtaACTCGAATTCGGAAGTGCCTCACCCAATACTGTTCATACCAAGAGTGTGTACACCGTTGGTGACCACCAGTGAAATGTCAGAACGTTTGTTATTACACTTGAACATCTCAACACCAGACCCAGAAGGTAATGAGATTGCCATATACAAGGGTGTCTGTGATGTAAAGATCATGGAAGGAAGGGATATAAACATCAGGTATGCATCACCAAATAGTTTCTCAAGCATTGACAACATAAATGTGATTCTGGCTGAAGCTAATCAGATTACAATACCTGCTTACAACGATTCTCAAGTCTGGATTGACCCGGCTAGGAGCCCATTTGTCTACAACCGTTGTGACTCACCGCCTCTGGAGACTTACACCGTACATGAGAGTAATGACAACAACATTACGTTGGAGCAGCACAACACATACATAACTCAAAATGTGTATAATTACAACGAAGCTATTCGGTACTCTCCTGTCTGTGAAGAACAAAAAACAGTCAAGAAGATACAAGACAATGTTCGGAATTCAGACAGCCATAACTTGTATGAGAATGAAGAGCTTGAATGTGGGGTGTTTCTGTCTCAGTTGTCTGAAGAAatcaatgaaaaagatgctaggGCACGAGACGAGAGGAAGTTTGTTGGTCTGCAGACGGACAACGGAGCATTGAAACAGCTGATGTCTACAAATATACAGTCTGTGTCGAGACAGCAGAAGACTATATTGTTTTTAGGTCATGACTCTGGGTCCGGACAGACGGTACAGAATATTGCCATCAATGATCCTTCACTGGAGTGTGTTGGAGCTGGTGAAGTGGAGACTGAATTTAGTATAGATGACTCCAACATTACAAACAACCCAAGCACGAAAAAATACCAGTGCAACAAATGCAAACAGATATTTGACCAACTATCTGCCTTCAAACTGCACGTGGTCAGCAGCCACCGGCGCTCCGTCTCTGGGAACCTGAAGTTCATGTGCACAGAATGCGGGAAAAACTTGAAAAACCAAGAAAAGTTTGAGCAACACTGCCTCGGTCACGGCGACCCAGATCTAGAATGTAACAAGTGCCACAAAGTGTTCGCGTCTAAATTCACCTTACGCAATCACCGTAAGATACATTCTCGGATGTTCCCCTGCAGCTACTGTGCAAAGAGCTTTGCCACGATGCAGGAATTGCACTCACATTCATCAAAAATTCACTTCAAATTTATGTGCGAAAAGTGTTCGTTTGTTTGCGAAACTTCATCCGATTTGACGGCTCACCAAAGAGCTCATAATAAGAGCCCCACGAGCTCTTTGAAGAGCTCCAGTGAATCTGAATTCGCTGAAGGCGTGTTTGGGGGGAGTTTCGAGGGGCTAAGTGATATTTCGGTGGCAGAAGAGTTAGTCAAACAAGAGGAGGAGGAACATCTACAAACGCCTGACTCGGTTATCGCGAAGGTGATATCCAACAATATATTTCAATCTCAATCCAAGACGAACAAGACACAGAGGAAGTATAACAAGACCTGCGAAGTGTGTCTAAAAAAGTTCGATCGGATCGGTGACCTCAAGAGGCATCTCATCGAGCACGTGGTAAGGAGCACCCTGGCCAAGAACCCGGTAAACAAGTTCGGGGTCCTTAACATCCGCTGCGAGATCTGTCAGGAACGGGTATTTTCAAAAATCGATAGATACAAAGCCCATCTGAGGGAACACGCAAAGCTCACTCTCTACAAGTGTACCTTTTGCGACAAATCCTTCAGCGACTCCAGTAACTTTTCTAAGCACAAAAAAATCCACGGCACCACCTACTTCCAATGTGACATGTGCCAACGTAAGTTCAATTCCAAGAAAATGATAACTCAGCATATGGAGTACCACAACAAAACTCAGCCTATGAAATGTCAATATTGCGAGAAAGTGTTCCATTTTGAGTCTATGCTGAATAAGCATATGAGATGCTCGCATACCAAGGTAACAACGAGCAGATTCAGGTGTAGGTTCTGCCGTCAGTATTTCAGAAGTTTGAAGGAGAAGTGGGACCATGAATGGACAGCTCATAATGCACGGAAGGTGATTGTGGACTGCCTGTTTTGTGATTCCAGGTTTAGGAAGTATTCAGAGTTAAAAAGACATTGTATGGAGGAACATGATACCGTCATACCTCCAGCAAAAAAATCGCTAAGATGGAAGTACACGAAGTTGAGAATGATTGAAGATCAGTAG
Protein Sequence: MEGEECNSNSEVPHPILFIPRVCTPLVTTSEMSERLLLHLNISTPDPEGNEIAIYKGVCDVKIMEGRDINIRYASPNSFSSIDNINVILAEANQITIPAYNDSQVWIDPARSPFVYNRCDSPPLETYTVHESNDNNITLEQHNTYITQNVYNYNEAIRYSPVCEEQKTVKKIQDNVRNSDSHNLYENEELECGVFLSQLSEEINEKDARARDERKFVGLQTDNGALKQLMSTNIQSVSRQQKTILFLGHDSGSGQTVQNIAINDPSLECVGAGEVETEFSIDDSNITNNPSTKKYQCNKCKQIFDQLSAFKLHVVSSHRRSVSGNLKFMCTECGKNLKNQEKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHRKIHSRMFPCSYCAKSFATMQELHSHSSKIHFKFMCEKCSFVCETSSDLTAHQRAHNKSPTSSLKSSSESEFAEGVFGGSFEGLSDISVAEELVKQEEEEHLQTPDSVIAKVISNNIFQSQSKTNKTQRKYNKTCEVCLKKFDRIGDLKRHLIEHVVRSTLAKNPVNKFGVLNIRCEICQERVFSKIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDMCQRKFNSKKMITQHMEYHNKTQPMKCQYCEKVFHFESMLNKHMRCSHTKVTTSRFRCRFCRQYFRSLKEKWDHEWTAHNARKVIVDCLFCDSRFRKYSELKRHCMEEHDTVIPPAKKSLRWKYTKLRMIEDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01441402;
90% Identity: iTF_00037191;
80% Identity: -