Taur016183.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tiliacea aurago
Gene Symbol
-
Assembly
GCA_948098905.1
Location
OX402580.1:14026902-14031042[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 2.4e-06 0.00021 22.2 0.4 1 23 353 375 353 375 0.97
2 7 0.00064 0.054 14.6 0.3 1 23 381 403 381 403 0.95
3 7 0.00014 0.012 16.6 3.0 1 23 409 431 409 431 0.98
4 7 0.00023 0.019 16.0 4.1 1 23 437 459 437 459 0.99
5 7 6.8 5.7e+02 1.9 0.1 14 23 483 492 478 492 0.83
6 7 1.8e-05 0.0015 19.5 7.0 1 23 498 520 498 520 0.98
7 7 0.0001 0.0086 17.1 0.4 1 23 526 549 526 549 0.95

Sequence Information

Coding Sequence
ATGTTAGATCCTATTGATACTATCGACATGAAATCGTGTCGTATATGTCTGACAAACAAAAAACCATTATGTCCTCTATTCAGATACAAGTTGTCTGGTAATTATGCTGAAATGCTTACAGCGATTGCCGACGTAAAGGTTTCATCCAATGATGGCTTGCCTGAAAAGATATGCCTCAAATGCTGCACCACTTTGGAGAAAGCATACCTACTTAAAACAGTGGCTGAAAGGTCTGATAAGAAACTGAGAAAAATATTAGCTAGGGAAAAAGAAAATGTACCAACTAAAAAAATTGCATTTGATTCTTTTACGGACATCAAAAGTGAAATTGGCCCGTTGACAATCAAACCTGAACCAAAATGGGAAATGGAAATAGAGGTGCCAGAAAAGCCTGTGGAAACTATGGATGGCAAAGATATTGTGATTGCTCAAACAGTGATAAGAAAAGTAGATCCTAATGCAGAAGAAGTAAAATATGATAACTATGATGATGATGATGTGCAGTTAACTTGGAGAACTACAAGAACTAATTATGCTACTAAAAGTGATCCTGATGTTGAGGCTGAATATTTAGATGATGATGTTTTCCAAGATGATGATGATGATGACTATGTTCCTCCAGTTGAAAAACCCAAAACTAAATTTAAGAAACCTAAACTGTCAGATATCAAAGTTTTTAAAGGTAAAACTGTTGTAAGGAAAGTAAAAGTTCTGAAAAAATTTAAAGATGAATTTGACATGGGTTCTGGTAGATCTAGAGATGAGAATAAATCACGAGCTACTACAATTACTTGCTATCCAATTTTAAAGAATGGTTCAAGAGGTTCACCTATCCTATTAAAGAGACCAAAGGATGCAACGGTACTAAAAGTTCATACAGGATATAAAACAAAAACTACATCATCTATTGGAGACAAAATTGTGCGTAGAGAAAAGCCTGTGAGAATGGTACGGACTGCTGTCACCAAACAACGGGAGAAACTGGTGTGCCCTGTATGTGGTATACTTACATTCACTTTAGGCAATCACATAGCCACACATCAAGAGAAAAAAAGATACACATGTGCTCAATGCCCAAGATCATTTGCACAGAAGAGTAATTTGATGGTCCATGCAAAACAACATACAGGAATTAAAGATCACATTTGTGAAGTATGTGGAGCTGGTTTTTACAGCCAGAAATCTTTGGTTAGACATAATTTAATTCATAAAGGAGAGAGACCATTTTCCTGCAATTTGTGTACAAAGAGATTTATTGCTCGTTGTGACTTGAATCGCCACCTCCGCATACATTCGGGTTACAAACCCTTCAAATGTAACACTTGCACAATGTCGTTCAACGCGAAACATCAGTTGCAAAACCACGAGAGAATGCACACCGGGGAGCGGCCGTACACATGTCAGGTGCGTCATAGTCTTTACATTATTGTTGTCACGTTCCAGATGGCAGGTCTGCGCCGCCATATGGCGATACATACTGGCGAAAAACGGTTCAACTGTGACTTCTGCAGTAAAAAATTTACGCAAAGCCATCATCTACAGAACCATATGATTACCCACACTGGTGATAGGCCCTATAATTGCGAGGTCTGCAATGTTGCATTCAGTTACAAAGTGAACTTAAATAACCACGTGTTCAAAGTGCATGGTATCAACCTGAAATTCAAATCTATTCATACTGTGACTGAGGATGTGCTTCGACGGGAAATGAGCATGTTAAATGAAACAAGAGTTGCACTATCGCATATTATGCCGCAGTTGGGAGAAGTACCAACGCCGGCTGCTCATGAAACTGTATTATCATTATCCTGA
Protein Sequence
MLDPIDTIDMKSCRICLTNKKPLCPLFRYKLSGNYAEMLTAIADVKVSSNDGLPEKICLKCCTTLEKAYLLKTVAERSDKKLRKILAREKENVPTKKIAFDSFTDIKSEIGPLTIKPEPKWEMEIEVPEKPVETMDGKDIVIAQTVIRKVDPNAEEVKYDNYDDDDVQLTWRTTRTNYATKSDPDVEAEYLDDDVFQDDDDDDYVPPVEKPKTKFKKPKLSDIKVFKGKTVVRKVKVLKKFKDEFDMGSGRSRDENKSRATTITCYPILKNGSRGSPILLKRPKDATVLKVHTGYKTKTTSSIGDKIVRREKPVRMVRTAVTKQREKLVCPVCGILTFTLGNHIATHQEKKRYTCAQCPRSFAQKSNLMVHAKQHTGIKDHICEVCGAGFYSQKSLVRHNLIHKGERPFSCNLCTKRFIARCDLNRHLRIHSGYKPFKCNTCTMSFNAKHQLQNHERMHTGERPYTCQVRHSLYIIVVTFQMAGLRRHMAIHTGEKRFNCDFCSKKFTQSHHLQNHMITHTGDRPYNCEVCNVAFSYKVNLNNHVFKVHGINLKFKSIHTVTEDVLRREMSMLNETRVALSHIMPQLGEVPTPAAHETVLSLS