Basic Information

Insect: Pyrrhia umbra
Gene Symbol: -
Assembly: GCA_963891755.1
Location: OY982921.1:9045078-9048764[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.6e-06 0.00014 23.0 0.7 1 23 354 376 354 376 0.97

2 7 0.0004 0.035 15.4 0.3 1 23 382 404 382 404 0.95

3 7 0.00016 0.014 16.6 3.0 1 23 410 432 410 432 0.98

4 7 0.00025 0.022 16.0 4.1 1 23 438 460 438 460 0.99

5 7 7.7 6.7e+02 1.9 0.1 14 23 483 492 478 492 0.83

6 7 4e-05 0.0035 18.5 6.4 1 23 498 520 498 520 0.97

7 7 4.7e-05 0.0041 18.3 0.4 1 23 526 549 526 549 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.6e-06	0.00014	23.0	0.7	1	23	354	376	354	376	0.97
2	7	0.0004	0.035	15.4	0.3	1	23	382	404	382	404	0.95
3	7	0.00016	0.014	16.6	3.0	1	23	410	432	410	432	0.98
4	7	0.00025	0.022	16.0	4.1	1	23	438	460	438	460	0.99
5	7	7.7	6.7e+02	1.9	0.1	14	23	483	492	478	492	0.83
6	7	4e-05	0.0035	18.5	6.4	1	23	498	520	498	520	0.97
7	7	4.7e-05	0.0041	18.3	0.4	1	23	526	549	526	549	0.95

Sequence Information

Coding Sequence: ATGTTAGACCCAATTGATACTATCGACATGAAATCGTGTCGAATATGcttgacaaataaaaaaccattaTGTCCTCTATTCAGATATAAGTTGTCCGGTAATTATGCTGAAATGCTTACAGCAATTGCCGATGTTAAGGTTTCATCTAATGATGGCCTACCTGAAAAGATTTGCCTTAAATGTTGCACCACTTTGGAAAAAGCATACCTACTCAAAACAGTGGCTGAAAGGTCTGATAAGAAACtgagaaaaatattacaaaggGAAAAAGAGAATgttccaacaaaaaaaattgcCTTTGATTCCTTTACTGACATAAAAAGTGAAATTGGACCGTTGACAATAAAACCTGAACCAAAATGGGAAATGGAAATAGAGGTGCCAGAAGGAAGTAAACCTGTTGAAACGATGGATGGCAAAGATATTGTCATTGCAAACACAATCATAAGAAAAGTTGATCCAAATGCGGAAGAAATCAAAATTGATGATTCTGATGATGTGCAATTAACTTGGAGGACAACAAAGACCAATTATGCTACAAAAAATGATCCAGATgCTGAATATTTAGATGATGATGTTTTCcaagatgacgatgatgatgattatgtacCTCCAGTTGAAAAGTCCAAAACTAAATTTAAGAAACCAAAACTGTCTGATATCAAAGTATTCAAAGGTAAAACTGTTGTAAGGAAAGTTAAAgtattaaagaaatataaagatGAATATGACATTGATTCTGGCAGATCTAGGGATGAGAATAAAACAAGATCTACAACAATCACTTGCTATCCAATTTTGAAGAATGGTTCCAGAGGTTCACCTATACTTTTAAAGAGACCAAAAGATGCTACAGTATTAAAAGTTCATACAGGATACAAATCCAAAACTTcaggatcatcatcatcatgtgaGAGCAAAGTTGTACGAAGAGAAAAACCTGTTAGAATGGTCCGAACTGCTGTTACCAAGCAACGTGAAAAACTAGTATGTCCCGTTTGTGGTATCCTTACTTTCACTTTGGGCAATCACATAGCCACTCATCAAGAGAAAAAGAGATACACTTGTACTCAATGTCCAAGATCGTTTGCACAGAAAAGTAATTTGCTGGTCCATGCTAAACAACATACAGGAGTAAAAGATCACATTTGTGAGATATGTGGAGCTGGTTTCTACAGCCAGAAGTCATTGGTTAGacATAACTTAATTCATAAAGGAGAGAGACCCTTTTCCTGCAATTTGTGTACAAAGAGATTCATTGctCGTTGTGATCTGAATCGGCACCTGCGCATACATTCTGGTTACAAACCGTTCAAATGTAACACTTGCACAATGTCGTTCAACGCGAAACATCAGTTGCAAAACCACGAGCGAATGCACACCGGGGAGCGGCCGTACACATGCCAGGTGCGTCATAGTCCTTATATCTTTGTCACGTTCCAGATGGCAGGCCTGCGCCGCCATATGGCGATACATACTGGCGAAAAACGGTTCAACTGTGGCTTCTGCAATAAAAAATTCACACAAAGCCATCATCTGCAGAATCATTTGATAACCCACACTGGCGATAGGCCTTATACTTGCGAGGTCTGCAATGTTGCATTCAGTTACAAAGTGAACTTAAATAACCATGTGTTCAAAGTACACGGTATTAACCTGAAATTCAAATCTATTCATACTGTGACTGAGGATGTCCTGCGACGGGAGATGGGTATGTTAAATGAAACAAGAGTTGCAATATCGCATATCATGCCGCAGTTAGGCGAAGTGCCGACGCCGGCCGCGCATGAAACTGTCCTCTCATTGTCCTGA
Protein Sequence: MLDPIDTIDMKSCRICLTNKKPLCPLFRYKLSGNYAEMLTAIADVKVSSNDGLPEKICLKCCTTLEKAYLLKTVAERSDKKLRKILQREKENVPTKKIAFDSFTDIKSEIGPLTIKPEPKWEMEIEVPEGSKPVETMDGKDIVIANTIIRKVDPNAEEIKIDDSDDVQLTWRTTKTNYATKNDPDAEYLDDDVFQDDDDDDYVPPVEKSKTKFKKPKLSDIKVFKGKTVVRKVKVLKKYKDEYDIDSGRSRDENKTRSTTITCYPILKNGSRGSPILLKRPKDATVLKVHTGYKSKTSGSSSSCESKVVRREKPVRMVRTAVTKQREKLVCPVCGILTFTLGNHIATHQEKKRYTCTQCPRSFAQKSNLLVHAKQHTGVKDHICEICGAGFYSQKSLVRHNLIHKGERPFSCNLCTKRFIARCDLNRHLRIHSGYKPFKCNTCTMSFNAKHQLQNHERMHTGERPYTCQVRHSPYIFVTFQMAGLRRHMAIHTGEKRFNCGFCNKKFTQSHHLQNHLITHTGDRPYTCEVCNVAFSYKVNLNNHVFKVHGINLKFKSIHTVTEDVLRREMGMLNETRVAISHIMPQLGEVPTPAAHETVLSLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707349;
90% Identity: iTF_01440456;
80% Identity: -