Basic Information

Insect: Brachylomia viminalis
Gene Symbol: -
Assembly: GCA_937001565.2
Location: CAKZJP020000423.1:891285-895121[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.9e-06 0.00041 22.2 0.4 1 23 352 374 352 374 0.97

2 7 0.00042 0.059 15.4 0.3 1 23 380 402 380 402 0.95

3 7 0.00017 0.024 16.6 3.0 1 23 408 430 408 430 0.98

4 7 0.00026 0.038 16.0 4.1 1 23 436 458 436 458 0.99

5 7 8 1.1e+03 1.9 0.1 14 23 482 491 477 491 0.83

6 7 2.1e-05 0.003 19.5 7.0 1 23 497 519 497 519 0.98

7 7 0.00012 0.017 17.1 0.4 1 23 525 548 525 548 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.9e-06	0.00041	22.2	0.4	1	23	352	374	352	374	0.97
2	7	0.00042	0.059	15.4	0.3	1	23	380	402	380	402	0.95
3	7	0.00017	0.024	16.6	3.0	1	23	408	430	408	430	0.98
4	7	0.00026	0.038	16.0	4.1	1	23	436	458	436	458	0.99
5	7	8	1.1e+03	1.9	0.1	14	23	482	491	477	491	0.83
6	7	2.1e-05	0.003	19.5	7.0	1	23	497	519	497	519	0.98
7	7	0.00012	0.017	17.1	0.4	1	23	525	548	525	548	0.95

Sequence Information

Coding Sequence: ATGTTAGATCCAGTTGATATTATCGACATGAGATCGTGTCGTATATGTCTGACAAACAAAAAACCATTATGTCCTCTATTTAGATATAAATTGTCTGGTAATTATGCTGAAATGCTTACCGCGATTGCCGACGTAAAGGTTTCATCCAATGATGGCTTGCCTGAAAAGATATGCCTCAAATGCTGCACCACTTTGGAGAAAGCATACTTACTGAAAACAGTGGCGGAAAGatCTGATaaaaaactgagaaaaataTTAGCTAGGGAAAAAGAGAATGTACCAACTAAAAAGATTGCATTTGACTCTTTTACGGACATAAAAAGTGAAATTGGCCCATTGACAATCAAACCTGAACCAAAATGGGAAATGGAAATAGAGGTGCCAGAAAAGCCTGTGGAAACCATGGATGGCAAAGATATTGTGATTGCTCAAACAGTGATAAGAAAAGTAGATCCTAATGCAGAGGAGGTAAAAATTGATAACTATGATGATGATGTGCAGTTAACTTGGAGATCTACAAGGACTAATTATGCTACTAAAAGTGATCCTGAAGCTGAGGTTGAGTATCTAGATGATGATGTTTTCcaagacgatgatgatgatgactatgTTCCTCCAGTTGAAAAGCCCAAGACTAAATTTAAGAAACCCAAATTGTCCGATATCAAAGTTTTTAAAGGTAAAACTGTTGTAAGGAAAGTAAAAGTCCTGAAAAAATTTAGAGATGAATTTGACATGGGTTCTGGTAGATCTAGAGATGAGAATAAATCACGAGCTACTACAATTACTTGCTATCCAATTTTAAAGAATGGTTCAAGAGGCTCGCCTATCCTATTAAAGAGACCAAAGGATGCAACAGTACTAAAAGTTCATACAggatacaaaacaaaaactccAGCATCTGTTGGAGATAAAATTGTACGTAGAGAAAAACCTGTGAGAATGGTACGGACTGCTGTCACTAAACAACGGGAGAAACTGGTGTGCCCTGTATGTGGTATACTTACGTTCACTTTAGGCAATCACATAGCCACACATCAAGAGAAAAAGAGATATACTTGTGCTCAATGCCCAAGATCATTTGCACAGAAGAGTAATTTGATGGTCCATGCTAAACAACATACAGGAATTAAAGATCACATTTGTGAAATATGTGGAGCTGGTTTTTACAGCCAGAAATCTTTGGTTAGACATAATTTAATTCATAAAGGAGAGAGACCATTTTCCTGCAATTTGTGTACAAAGAGATTTATTGCTCGTTGTGACTTGAATCGCCACCTCCGCATACATTCGGGTTACAAACCATTCAAATGTAACACTTGCACAATGTCGTTCAACGCGAAACATCAGTTGCAAAACCACGAGAGAATGCACACCGGGGAGCGGCCATACACATGTCAGGTGCGTCATAGTCTTTACATTATTGTTGTCACGTTCCAGATGGCAGGTCTGCGCCGCCATATGGCGATACATACTGGCGAAAAACGGTTCAACTGTGACTTCTGCAGTAAAAAATTTACGCAAAGCCACCATCTACAGAACCATATGATTACCCACACTGGTGATAGGCCCTATAATTGCGAGGTCTGCAATGTTGCATTCAGTTACAAAGTGAACTTAAATAACCATGTGTTCAAAGTGCATGGTATCAACCTGAAATTCAAATCTATTCATACTGTAACTGAGGATGTGCTTCGACGGGAAATGGGCATGTTAAATGAGACAAGAGTTGCACTATCGCATATTATGCCGCAGTTGGGAGAAGTACCGACGCCGGCTGCGCATGAAACTGTACTATCATTATCCTGA
Protein Sequence: MLDPVDIIDMRSCRICLTNKKPLCPLFRYKLSGNYAEMLTAIADVKVSSNDGLPEKICLKCCTTLEKAYLLKTVAERSDKKLRKILAREKENVPTKKIAFDSFTDIKSEIGPLTIKPEPKWEMEIEVPEKPVETMDGKDIVIAQTVIRKVDPNAEEVKIDNYDDDVQLTWRSTRTNYATKSDPEAEVEYLDDDVFQDDDDDDYVPPVEKPKTKFKKPKLSDIKVFKGKTVVRKVKVLKKFRDEFDMGSGRSRDENKSRATTITCYPILKNGSRGSPILLKRPKDATVLKVHTGYKTKTPASVGDKIVRREKPVRMVRTAVTKQREKLVCPVCGILTFTLGNHIATHQEKKRYTCAQCPRSFAQKSNLMVHAKQHTGIKDHICEICGAGFYSQKSLVRHNLIHKGERPFSCNLCTKRFIARCDLNRHLRIHSGYKPFKCNTCTMSFNAKHQLQNHERMHTGERPYTCQVRHSLYIIVVTFQMAGLRRHMAIHTGEKRFNCDFCSKKFTQSHHLQNHMITHTGDRPYNCEVCNVAFSYKVNLNNHVFKVHGINLKFKSIHTVTEDVLRREMGMLNETRVALSHIMPQLGEVPTPAAHETVLSLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707349;
90% Identity: iTF_01440456;
80% Identity: -