Basic Information

Insect: Craniophora ligustri
Gene Symbol: -
Assembly: GCA_905163465.1
Location: LR990959.1:7457000-7461369[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.7e-06 0.00034 21.6 0.3 1 23 353 375 353 375 0.97

2 7 0.00032 0.031 15.4 0.3 1 23 381 403 381 403 0.95

3 7 0.00013 0.012 16.7 3.0 1 23 409 431 409 431 0.98

4 7 0.00021 0.019 16.1 4.1 1 23 437 459 437 459 0.99

5 7 6.7 6.3e+02 1.9 0.2 14 23 470 479 466 479 0.84

6 7 3.2e-05 0.003 18.6 7.2 1 23 485 507 485 507 0.98

7 7 5.1e-05 0.0048 18.0 0.3 1 23 513 536 513 536 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.7e-06	0.00034	21.6	0.3	1	23	353	375	353	375	0.97
2	7	0.00032	0.031	15.4	0.3	1	23	381	403	381	403	0.95
3	7	0.00013	0.012	16.7	3.0	1	23	409	431	409	431	0.98
4	7	0.00021	0.019	16.1	4.1	1	23	437	459	437	459	0.99
5	7	6.7	6.3e+02	1.9	0.2	14	23	470	479	466	479	0.84
6	7	3.2e-05	0.003	18.6	7.2	1	23	485	507	485	507	0.98
7	7	5.1e-05	0.0048	18.0	0.3	1	23	513	536	513	536	0.95

Sequence Information

Coding Sequence: ATGTTAGATCCAATAGATACTATCGACATGAAATCATGTCGTATATGCTTGACAAACAAAAAACCATTATGTCCTCTATTCAGATACAAGCTGTCTGGTAATTATGCTGAAATGCTAACAGCGATCGCCGATGTAAAGGTATCATCTAATGATGGCTTACCAGAGAAGATTTGTCTCAAATGTTGTACCACATTGGAAAAAGCATACCTACTTAAGACAGTGGCTGAGAGGTCTGATAAGAAGCTGAGGAAAATTCTAGCAAGGGAAAAAGAAAATGTTCCTACCAAGAAAATTGCATTTGATTCATTTACTGACATAAAAAGTGAGATTGGACCATTGACCATAAAACCTGAACCAAAATGGGAGATGGAAATAGAGGTACCAGATGGAAATAAACCTGTTGAAACTATGGAAGGAAAAGACATAGTTATTGCAAATACAGTCATAAGAAAAGTAGATCCTAATGCAGAAGAGATTAAAGTTGATAATTTGGATGATGTGCAATTAACTTGGAGAACAACTAGAACTAGCTATTCTACTAAAAATGATCCAGATGTTGAATATTTAGATGATGATGTTTTTCAAGACGATGATGATGATGATTATGTACCACCAGTTGAAAAACCCAAAACTAAATTTAAAAAACCAAAATTGTCAGATATTAAGGTATTTAAAGGCAAAACTGTTGTAAGAAAACTAAAGGTGCTGAAGAAATTTAAAGATGATTATGATATTGATTCGGGTAGATCAAGGGATGAGAATAAATCACGGGCCACAACAATAACATGTTTTCCAATATTAAAGAATGGTTCAAGAGGGTCACCTATACTTTTGAAGAGGCCAAAGGATGCTACCATACTAAAAGTTCATACTGGGTATAAATCGAAAACTCCAAGCTCATCAACAGATAGTTCCAAAACTATTCGCAGGGAAAAACCTGTCCGCATGGTAAGGACCGCTGTGGCCAAACAAAGAGAGAAACTAGTATGTCCAGTATGTGGTATACTAACATACACTTTGGGCAATCATATAGCAACTCACCAAGAAAAGAAAAGATATACATGTGCGCAATGTCCGCGATCTTTCGCACAGAAAAGTAATTTACTGGTACATGCTAAGCAACACACTGGAATAAAAGATCACATATGTGAAATATGTGGTGCTGGTTTTTACAGTCAGAAATCTTTAGTTAGACACAATTTAATTCATAAAGGAGAACGACCATTTTCTTGCAATCTGTGTACAAAGAGATTTATTGCTCGTTGTGATCTGAATCGGCACCTGCGTATACATTCGGGTTACAAGCCGTTCAAATGTAACACTTGCACAATGTCATTCAACGCGAAACATCAGTTGCAAAACCACGAGCGAATGCACACCGGGGAGCGGCCGTACACATGTCAGATGACTGGTCTGCGTCGCCATATGGCGATACATACTGGTGACAAACGGTTCAACTGTGAGTTCTGCAATAAAAAATTCACACAAAGACACCATCTGCAGAACCATTTGATTACTCACACTGGCGATAGGCCCTATTCTTGCGAGGTGTGTAATGTTGCGTTCAGTTACAAGGTAAATTTAAATAACCATGTGTATAAAGTACATGGCATCAACCTCAAATTCAAATCAATTCATACCGTGACCGAAGACATCCTTCGCAGAGAAATGGGTTTACTAAGTGAAACAAGAGTTGCATTATCGCATATCATGCCACAACTAGGAGAAGTACCAACCCCGGCTGCACATGAAACCGTACTCTCTTTAGCCTGA
Protein Sequence: MLDPIDTIDMKSCRICLTNKKPLCPLFRYKLSGNYAEMLTAIADVKVSSNDGLPEKICLKCCTTLEKAYLLKTVAERSDKKLRKILAREKENVPTKKIAFDSFTDIKSEIGPLTIKPEPKWEMEIEVPDGNKPVETMEGKDIVIANTVIRKVDPNAEEIKVDNLDDVQLTWRTTRTSYSTKNDPDVEYLDDDVFQDDDDDDYVPPVEKPKTKFKKPKLSDIKVFKGKTVVRKLKVLKKFKDDYDIDSGRSRDENKSRATTITCFPILKNGSRGSPILLKRPKDATILKVHTGYKSKTPSSSTDSSKTIRREKPVRMVRTAVAKQREKLVCPVCGILTYTLGNHIATHQEKKRYTCAQCPRSFAQKSNLLVHAKQHTGIKDHICEICGAGFYSQKSLVRHNLIHKGERPFSCNLCTKRFIARCDLNRHLRIHSGYKPFKCNTCTMSFNAKHQLQNHERMHTGERPYTCQMTGLRRHMAIHTGDKRFNCEFCNKKFTQRHHLQNHLITHTGDRPYSCEVCNVAFSYKVNLNNHVYKVHGINLKFKSIHTVTEDILRREMGLLSETRVALSHIMPQLGEVPTPAAHETVLSLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707349;
90% Identity: iTF_01440456;
80% Identity: -