Tbat005331.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990514.1:1349101-1354039[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0024 0.18 12.8 0.6 1 23 5 28 5 28 0.93 2 29 1.8 1.4e+02 3.7 1.1 3 22 58 77 58 79 0.90 3 29 0.00034 0.026 15.4 1.5 1 23 101 123 101 123 0.98 4 29 0.0042 0.31 12.0 0.3 1 23 127 149 127 149 0.96 5 29 0.00022 0.016 16.1 0.3 1 23 154 177 154 177 0.96 6 29 0.015 1.1 10.3 2.5 1 23 183 206 183 206 0.91 7 29 6.4e-05 0.0048 17.7 0.2 1 23 213 236 213 236 0.98 8 29 8.1e-05 0.0061 17.4 1.0 1 23 242 264 242 264 0.98 9 29 2.6e-06 0.0002 22.1 0.9 1 23 270 292 270 292 0.99 10 29 8.7e-05 0.0065 17.3 6.6 1 23 298 320 298 321 0.95 11 29 0.5 37 5.5 1.0 1 23 456 479 456 479 0.94 12 29 3.6 2.7e+02 2.8 0.2 2 23 504 526 503 526 0.93 13 29 0.01 0.77 10.8 0.3 1 23 550 572 550 572 0.97 14 29 0.002 0.15 13.1 0.4 1 23 576 598 576 598 0.98 15 29 0.00017 0.013 16.4 0.5 1 23 603 626 603 626 0.96 16 29 0.005 0.38 11.8 0.3 2 23 633 655 633 655 0.93 17 29 0.083 6.2 7.9 6.4 1 23 662 685 662 685 0.96 18 29 0.00015 0.012 16.5 3.0 2 23 692 713 691 713 0.96 19 29 0.00022 0.017 16.1 1.7 1 23 719 741 719 741 0.98 20 29 0.4 30 5.8 0.2 1 23 887 910 887 910 0.92 21 29 2.6 1.9e+02 3.3 0.1 2 23 936 957 935 957 0.94 22 29 0.015 1.1 10.3 0.2 1 23 979 1001 979 1001 0.97 23 29 5.3e-05 0.004 18.0 0.6 1 23 1005 1027 1005 1027 0.98 24 29 1.9e-05 0.0014 19.4 0.5 1 23 1032 1055 1032 1055 0.96 25 29 0.0014 0.1 13.6 0.4 2 23 1062 1084 1062 1084 0.97 26 29 6.6e-05 0.005 17.7 2.0 1 23 1091 1114 1091 1114 0.98 27 29 0.097 7.3 7.7 5.2 2 23 1121 1142 1121 1142 0.96 28 29 1.1e-06 8e-05 23.3 0.9 1 23 1148 1170 1148 1170 0.98 29 29 0.32 24 6.1 0.1 2 23 1176 1198 1175 1198 0.90
Sequence Information
- Coding Sequence
- ATGAAAAACTTGTACTTGTGCTTTTACTGTGAACAGCAATTCAGCGATCCAGCCAAACTTCGAAATCATAACAATATGGAACATCAAACATTAACAATAATCGAAATTAAGTATGCTTTATCAAAAGTGAAGAAGTTCGAATTGATCAAAGTGGACATCACAAAGATCGGCTGTAAGATTTGCAATGAAGATCTACACGATTTCAAACAACTAAAGATACATATTGTCGACAAACACAGGGAAAATATAGATCTTATGTCGAACGATGGTGTTCTACCCTTCAAAGTGACACAATCCGACTTTCAATGCGCGTTGTGCGATGAGAAATACGAAGATTTCAAATCGTTGAATCACCATATGAATGTACACTTTCAGAATTTCATTTGCGAGCAATGTGGTACTGGATTTATGACTCCCGAACGTTTGAGGACGCATGGCTTTACTCATGAGACTGGGTCGTTTAGTTGCGACGGCTGCGATAAAGTATTTCGATCGTCTAATGCACAGAAGGAGCATTACGCCACAGTTCATATGAAGGTCAAGCGTCACCGATGTCCACAATGCTCGGAGACATTTAGAAATTACTTCCAGAGAAACAAGCACGTATCAGCAGTTCACGGTGTGAAGCTAAAAGAGTATAAATGTTCCATGTGTCCTAAGGTGTTCACGATGAGCGGCAAATTAGGAGTGCACGTTAGATCTGTACATTTGAAAATGAAACGGTACTCATGTGATGTGTGCGATTGGAAGTTTTATTCTAAAACAGAATTGAAGGACCATAAAATTAGGCACGGGGGAGAGAGAAAATACCAGTGCGGTGTCTGTAAGAAAGCGTACGCTAGGAAGTTTACTTTGAAAGAGCATATGCGAATACATGAGAACGATAGAAGGTTTATTTGTACAATATGCGGGAGGTCGTTTGTTCAAAATTGTAGCTTAAAACATCACACTAAAGTTCATCATCCAACTAATGTCGGTTCTGGAACCGACTCGTCTTTAAATGAGGACACAAAGAAGCAGCCGCAAAGAATAGTGCCGCTTTTCCAAGTAGCCTACGATCGGAGCTTATGTAGGCCTCTGGGAACCGTTCTGGACTTCAGTAAATTAAGTGAACTCAAAACTAATGTTCAAAACGCTAGCTTGTTACCTAAAACTTCGGCTACGAGAGACTTTACACCCTCTCGCAGCCCCTCGCCGTTATCACCTGCAGATTCACCATTATTATACATACAGGAAGAAACGACTCCACAAGTAGACTTCATCCATAAACCAAAGACACAGCCGAAAGCACCAGACGTCAGGCAAAACGCTTTGACAGTATTTGAGTTCTCAACAATATATCCCTTCGTTTACAGCAATAATAAGTTTAAATGTTTCGTCTGCTGCGAACCATTTTTTGATACGACTCTCCTAAGAGAGCATATGGCGGAGGCACACACATTCACAGCTGTAAAAAGACTGGTCAATAATAAACGGGAAAATGTATTGAAAGTAGATGTTAGTGATATAATGTGTAAGATTTGTACCCTAAGGCCAAAAGATTTAGTCGAAATGAAGCAGCATCTACAGAAAATCCACGAGAAACCGATCGATCCGGATTTGCATGATAATATAATTCCGTTCAACTTGCAAGCCATCGACGGCTCTCACAAATGCGTCATATGCAACGAGACATTCATCAAAGTTAGGGTATTGGTTATACATATGAGCGTGCACTTTAATAACTACAGTTGCGAATTCTGCGGGTCAGGGTTCATGACATTACGCCTCCTCAAGAAACACTTAGAAGTCCACGAGAACGGAAACTTCCCCTGCGACAGATGCAACAAAGTTTTCACTACACCATACAAGAGAACACTTCATATAAGGGGTGTACACTTAAAGCAGTATCCCAGAAGATGTCCAATATGCCCCGAAAGATTCAACTCCAACTACAAAAGGACAATACACCTCCAAGATGTGCATAATCAATCTACCAGGGTGCACAAGTGTGAAACGTGTGGACGCGGTTTCAATCTCAAATATCATCTGATATGTCACACACGTTCGGTACATCTGCAGGAGAGGAATCAACAGTGCGATGTTTGCTTCCAGAGGTTCTGCAATAAGGAGTCACTGAAACGTCACATGGTCATACATACAGGTGAAAAGAATCATAAATGCGATGTGTGTGGTATGGCGTTCTTGCGACGGAAGAATTTGAAGGATCATTTGCGGTTGCACGATATGGGAATCATCGAAGAAACAAAATCATCAATTATACTGAAAGACGAAGACGGATCGGATATAAAACTAACAGTCCTCAAGACACCCATATCCCTCGATAACCTTGAATATGAACACGAAGTTATCACTAAGAAACATAATAAAAAGAATAACAATGAAACCAAGACCGTTAAGAAGCCTCTAAAAGAGTTTAGAAACGATAATGATCCTTCTTTATGTAAAATTGCTGTTCTTAAGGAACCTATATCCCTGGATGCAATTACATGTGAAGATGAACTTAAATCTTCGATAACTTTCAACGTGAAAACTGTACAAGGTACTTTCTTATGTGGACAATTAAGAAGAACTAAAGGCCAAGAAATCTGGATGAAAAATGCGTTGATTATCTTTGAATACTCATACGTATATCCTTTTATTTACACGAACAATAAGTATAAATGTTTCATTTGTGCTAAACCGTTTCTTAATGCAAATGTATTGAAAGACCACACAAATGGCGACCATACTATTAAAGAGATGAGAAAAGAGATTAACAATAGAGTAAGGGATAAAAACTTTAAGGTTGACGTTACACAGTTGCAATGTAAACTATGTTTAGAAATATTAGGTAACATACAATCTCTGAAAGAACATTTGAAGGGTCATGGAAAAGAGATTGTCTTAAATCATCAAGATAACCTAGTTCCTTTTAATTTAGGTGGGACTACCTTTGCATGTCAAATCTGCGGCGAATCTTATCTCAAATTGAGACTCCTAATTATTCACATGAGTAAACATTTTAATAACTATAGCTGTGAAATATGCGGTTCAGTATTTATTTCTATGCATTTGTTGAAGCGCCATCTCCAGATTCACGAAACTGGGAGCTTTCCTTGCGACAAATGCGATAAAGTCTTTAGCAATTCAGCGAAGAAGACCTCTCATATGCGAGGGGTCCATTTGAAACAGTTTCCGAGACGATGTCCTGTCTGCCCAGAGAGATTTAATTCGGACTATCAAAGAACGAAACACTTAAGGATTGTACATAATCAGACAACTGGGTTATTCAGATGCGAAACCTGCGGCAGAGAGTATGATCTAAAATACCATCTTCTAAAACATATTAGATCTGTACATTTGCAGGAGCGGAATGAGGAATGCCGCATCTGTCATTCTAGATTCTTCTCAAAATACTGTCTTTCAAGACACATGGTTATCCATACGGGCGAGAAGAATTTCAAATGTGAAATTTGTGGGAAGGCATATGCTAGGAGGAAGAACTTGAGAGAGCATTCTCGGTCTCACGATGTTGGCCAAACTGTTTGTTCGGTGTGTGGACTGAATTGTGTGGACCATGTTGGTCTTGTTGCTCATGTTAGCGCAGCACATAGTACACTTAATTAA
- Protein Sequence
- MKNLYLCFYCEQQFSDPAKLRNHNNMEHQTLTIIEIKYALSKVKKFELIKVDITKIGCKICNEDLHDFKQLKIHIVDKHRENIDLMSNDGVLPFKVTQSDFQCALCDEKYEDFKSLNHHMNVHFQNFICEQCGTGFMTPERLRTHGFTHETGSFSCDGCDKVFRSSNAQKEHYATVHMKVKRHRCPQCSETFRNYFQRNKHVSAVHGVKLKEYKCSMCPKVFTMSGKLGVHVRSVHLKMKRYSCDVCDWKFYSKTELKDHKIRHGGERKYQCGVCKKAYARKFTLKEHMRIHENDRRFICTICGRSFVQNCSLKHHTKVHHPTNVGSGTDSSLNEDTKKQPQRIVPLFQVAYDRSLCRPLGTVLDFSKLSELKTNVQNASLLPKTSATRDFTPSRSPSPLSPADSPLLYIQEETTPQVDFIHKPKTQPKAPDVRQNALTVFEFSTIYPFVYSNNKFKCFVCCEPFFDTTLLREHMAEAHTFTAVKRLVNNKRENVLKVDVSDIMCKICTLRPKDLVEMKQHLQKIHEKPIDPDLHDNIIPFNLQAIDGSHKCVICNETFIKVRVLVIHMSVHFNNYSCEFCGSGFMTLRLLKKHLEVHENGNFPCDRCNKVFTTPYKRTLHIRGVHLKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNQQCDVCFQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDMGIIEETKSSIILKDEDGSDIKLTVLKTPISLDNLEYEHEVITKKHNKKNNNETKTVKKPLKEFRNDNDPSLCKIAVLKEPISLDAITCEDELKSSITFNVKTVQGTFLCGQLRRTKGQEIWMKNALIIFEYSYVYPFIYTNNKYKCFICAKPFLNANVLKDHTNGDHTIKEMRKEINNRVRDKNFKVDVTQLQCKLCLEILGNIQSLKEHLKGHGKEIVLNHQDNLVPFNLGGTTFACQICGESYLKLRLLIIHMSKHFNNYSCEICGSVFISMHLLKRHLQIHETGSFPCDKCDKVFSNSAKKTSHMRGVHLKQFPRRCPVCPERFNSDYQRTKHLRIVHNQTTGLFRCETCGREYDLKYHLLKHIRSVHLQERNEECRICHSRFFSKYCLSRHMVIHTGEKNFKCEICGKAYARRKNLREHSRSHDVGQTVCSVCGLNCVDHVGLVAHVSAAHSTLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01083554; iTF_01417040; iTF_01416084; iTF_01252028;
- 90% Identity
- -
- 80% Identity
- -