Tflu024870.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578242.1:2102291-2107011[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0039 0.3 12.3 1.9 1 23 5 28 5 29 0.93 2 27 0.00033 0.025 15.7 0.6 1 23 101 123 101 123 0.98 3 27 0.0026 0.2 12.9 0.2 1 23 127 149 127 149 0.94 4 27 0.0023 0.18 13.0 0.5 1 23 154 177 154 177 0.96 5 27 0.015 1.2 10.5 4.3 1 23 183 206 183 206 0.96 6 27 0.017 1.3 10.3 0.6 1 23 213 236 213 236 0.89 7 27 5.6e-05 0.0043 18.1 0.5 1 23 242 264 242 264 0.98 8 27 5.7e-07 4.4e-05 24.4 1.3 1 23 270 292 270 292 0.99 9 27 1.2 91 4.5 2.1 1 23 434 457 434 457 0.94 10 27 2.8 2.2e+02 3.3 0.8 2 23 482 504 481 504 0.94 11 27 0.012 0.89 10.8 0.3 1 23 528 550 528 550 0.97 12 27 0.0022 0.17 13.1 0.4 1 23 554 576 554 576 0.98 13 27 0.0013 0.1 13.8 0.5 1 23 581 604 581 604 0.95 14 27 0.0056 0.44 11.8 0.3 2 23 611 633 611 633 0.93 15 27 0.045 3.5 9.0 6.3 1 23 640 663 640 663 0.96 16 27 9.8e-05 0.0075 17.4 4.7 2 23 670 691 669 691 0.96 17 27 0.00025 0.019 16.1 1.7 1 23 697 719 697 719 0.98 18 27 0.012 0.9 10.8 2.2 1 23 862 885 862 885 0.96 19 27 0.058 4.5 8.6 0.2 2 23 911 932 910 932 0.96 20 27 0.076 5.9 8.3 0.2 1 23 954 976 954 976 0.98 21 27 7.3e-05 0.0056 17.7 0.3 1 23 980 1002 980 1002 0.98 22 27 3.6e-05 0.0028 18.7 0.4 1 23 1007 1030 1007 1030 0.96 23 27 0.00085 0.066 14.4 0.4 2 23 1037 1059 1037 1059 0.97 24 27 0.00015 0.011 16.8 1.1 1 23 1066 1089 1066 1089 0.98 25 27 0.0058 0.45 11.8 3.9 2 23 1096 1117 1095 1117 0.96 26 27 3.4e-06 0.00026 22.0 0.8 1 23 1123 1145 1123 1145 0.98 27 27 0.17 13 7.1 0.2 2 23 1151 1173 1150 1173 0.91
Sequence Information
- Coding Sequence
- ATGAAGAATTTATACTTGTGCTTTTATTGTGAACAGAGATTCAGCGATCCTGTCAAACTTCGAAATCATAACAAGGTTGAACATCATTCTATGACGACATATCAAATTAACTGCGCCTTGACGAAAGTAAAGAGATACGAGTTAATCAAAGTAGACATCACAAAGATAGGCTGTAAGATTTGCAATCAAGATATACACGATTTCAATGTGTTAAAAATACATATCGTTGACAAACACAAGAAACAAGTAGATCTAATGTCGAGCGATGGTGTACTACCGTTTACAATAACACAAGTTGACTTCCAATGCGTGTTATGCGATGAGAAATACGAAGATTTCAAGTCATTGAATCAACACATGAATGTTCACTTCCAGAACTATATTTGCGAGCAATGTGGCACAGGATTTATAACGCCTGAACGGTTGAGAACACATGGCTTCTCTCATGAAAGTGGATCGTTCTCTTGCGACGCTTGCGATAAGGTGTTCCGATCGTCAAACTCACAGAAGGAACACTACGCTACAGTCCATATGATGGTCAAACGTCACCACTGCCCGCAATGTCCAGAAACATTCAGGAATTACTTCCAAAGGAACAAGCATGTATCCACAGTTCACGGTTTGAAACTAAAGGAATACAAATGCACCATGTGTCCTAAAGTGTTCACTTTGACCGGGAAATTAGGATTTCATGTTAGGACTGTGCATTTGAAAATGAAACGGTATTCCTGTGATATGTGCGAGTGGAAATTTTACTCTAAGGCTGAGCTGAAGGAACATATGGTCAAGCACGGTGGCGAGAGGAAGTATCAGTGTGGTGTTTGTAAGAAATCGTACGCTAGGAAATATACATTGAAGGAGCACATGCGAATACATGAAAACGATAGGAGATACGAGTACATACATTCTGTTTCTTTTCTAGGAATCGACTCTGCATTAAATGTGGACACAGAGAAGCAACCAAAAAGAATAGTGCCGCTTTTCCAAGTTGCCTACGATCGGAGCTTATGTAAACCTCTGGGAACTGTTCTGGACTTCAGTAAATTAAATGCACTGAAATTGAACGTGCACAACAGTAGCCTATTGCCTACAACTTCGAAAGACTTTAGTCCCTCTCGCAGCCCATCTCCATTATCACCTGCGGACTCTCCAATACTATACATACAAGAAGACACGACCCTGCCCGTAGAATTCGTGCTTAAACCAAAGATACATCAGAAAACCCCAGACGTTAGGCAAAACGTCTTGACAATATTCGAGTTCTCAACTATCTACCCTTTCGTCTATAGTAACAATAAGTTCAAATGCTTCGTCTGCTGCCAACCATTCTTTGATACGACTCTTCTAAGAGAACATATGACGGAGGCACACACATTCACAGCTCTAAAAAGACTGGTCAATAATAAAAGAGAAAATGTCTTAAAAGTTGACGTGAGTGATATAATGTGCAAGATCTGCTCTATAAGGCCAAAAGATCTGGTAGAAATGAAgcaccatttaaaaaaaatccatgaGAAACCAATTGATCCGGAATTGCATGACAATATCATTCCGTTTAACTTACAAGCAGTCGATGGTTCACACAAATGCGTTATATGCAATGAAACATTCATCAAAGTTAGGGTATTGGTCATCCACATGAGTGTACACTTCAATAATTACAGTTGTGAATTTTGCGGGTCAGGATTCATGACTTTACGTCTCCTTAAGAAACATTTAGAAGTACATGAGAACGGCAACTTTCCCTGTGACAGATGCAACAAAGTATTCAATACTCCTTATAAGAGAACCCTCCATGTAAGAGGTGTGCACTTGAAACAGTATCCCCGAAGATGTCCGATATGTCCCGAAAGATTCAACTCGAATTACAAGAGGACGATTCACCTGCAAGATGTCCATAATCAATCGACAAGGGTGCATAAATGCGAGACGTGTGGACGTGCATTTAACCTCAAATATCATCTGATTTGTCACACCCGTTCAGTACATTTGCAAGAGAGGAACCAACAATGCGATGTGTGCCATCAAAGATTTTGTAACAAAGAATCATTAAAACGTCACATGGTCATACATACTGgtgaaaaaaatcataagtgTGATGTGTGCGGTATGGCGTTTTTGCGTCGGAAGAACTTGAAAGATCATTTAAGGTTGCATGATATGGgaatcATCGAAGAAACAAATTCGTCCATAATACTGAAAGATGAAGACGGATCCGATATAAAATTAACAGTTCTCAAGACTCCAATATGCCTTGATAACCTTGAATATGAACATGAAGATGTTAcgaaaaaacgtaaaaaaaaatacaacgcaACAAAGAGAAAACTGAAAAAGGAATTAAGAAATGACAACGATGCTACATTATCTAATATTGCTGTTTTAAAAGCGCCTATATCTCTTGATGCAATAAAAACCGAAGATGAACATAAATCCTCGATAACATTTAACGTAAAGACTGTACAAGGAACTTTTCTGTGTGGGCAGTCTCGAAGGACCAAAGAAGATGAAATCTGGAAGCAAAATGCGTTGACCATCTTTGAATATTCATACGTATACCCTTTTATTCACGCAAGCAATAAGTACAAATGCTTTATTTGCGCTAAATCATTTCTCAACGCAAATCATTTAAAAGACCACACAAATAATGACCATACCACTAAAGAAATGAGAAAAGAATTAAATAACAGGGTTAGAGATAAGAATTTAAAAGTTGACGTCACACAATTACAGTGTAAACTGTGTTCGGAAATATTAGTTAACTTACAATCTCTAAAAGAACATTTAAAAGGACACGGAAAAGATATTGAACCGGACCATCAAGATAACCTCGTgccttttaaattaaatggcgCGACTTTTGAATGCCAAATTTGTGGCGTAAATTATCTGAAATTGAGACTACTAATCATTCACATGAGCAAACATTTCAATAATTTCAACTGTGAAATATGTGGATCCGTTTTTATTTCCATGAATTTGTTGAAGCGCCATCTTCAAACTCATGAAACTGGCAGTTTCCCTTGCGATAAATGTGACAAAGTTTTTAGTAATTCAGCGAAAAAGACTTTGCATATGCGAGGGGTCCATTTGAAACAGTTTCCAAGAAGATGTCCCATCTGCCCTGAGAGATTCAACTCTGATTATCAAAGAACGAAACATTTGAGGATTATTCATAATCAGACAACCGGGCTGTTTAGATGTGAAACTTGCGGTCGAGAGTATGACTTAAAATATCATCTCCTCATACATATCAGATCCGTACATTTGCAGGAAAGGAACCAAGAGTGTCCAATCTGTCATTCGAGATTCTTCTCGAAATATTGTTTATCTAGACATATGGTTATCCATACGGGGGAGAAGAATTTCAAATGTGAGATCTGTGGGAAGGCTTATGCTAGAAGAAAAAACTTGAGAGAGCATTCCCAATCTCATGAGGTTGGCCAAACTGTTTGTTCGGTGTGTGGACAGAATTGTGTAGACCATGTGGGTCTTGTTGCGCATGTGAGCGCTGCGCATGGCTCTTTGAATTAA
- Protein Sequence
- MKNLYLCFYCEQRFSDPVKLRNHNKVEHHSMTTYQINCALTKVKRYELIKVDITKIGCKICNQDIHDFNVLKIHIVDKHKKQVDLMSSDGVLPFTITQVDFQCVLCDEKYEDFKSLNQHMNVHFQNYICEQCGTGFITPERLRTHGFSHESGSFSCDACDKVFRSSNSQKEHYATVHMMVKRHHCPQCPETFRNYFQRNKHVSTVHGLKLKEYKCTMCPKVFTLTGKLGFHVRTVHLKMKRYSCDMCEWKFYSKAELKEHMVKHGGERKYQCGVCKKSYARKYTLKEHMRIHENDRRYEYIHSVSFLGIDSALNVDTEKQPKRIVPLFQVAYDRSLCKPLGTVLDFSKLNALKLNVHNSSLLPTTSKDFSPSRSPSPLSPADSPILYIQEDTTLPVEFVLKPKIHQKTPDVRQNVLTIFEFSTIYPFVYSNNKFKCFVCCQPFFDTTLLREHMTEAHTFTALKRLVNNKRENVLKVDVSDIMCKICSIRPKDLVEMKHHLKKIHEKPIDPELHDNIIPFNLQAVDGSHKCVICNETFIKVRVLVIHMSVHFNNYSCEFCGSGFMTLRLLKKHLEVHENGNFPCDRCNKVFNTPYKRTLHVRGVHLKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDMGIIEETNSSIILKDEDGSDIKLTVLKTPICLDNLEYEHEDVTKKRKKKYNATKRKLKKELRNDNDATLSNIAVLKAPISLDAIKTEDEHKSSITFNVKTVQGTFLCGQSRRTKEDEIWKQNALTIFEYSYVYPFIHASNKYKCFICAKSFLNANHLKDHTNNDHTTKEMRKELNNRVRDKNLKVDVTQLQCKLCSEILVNLQSLKEHLKGHGKDIEPDHQDNLVPFKLNGATFECQICGVNYLKLRLLIIHMSKHFNNFNCEICGSVFISMNLLKRHLQTHETGSFPCDKCDKVFSNSAKKTLHMRGVHLKQFPRRCPICPERFNSDYQRTKHLRIIHNQTTGLFRCETCGREYDLKYHLLIHIRSVHLQERNQECPICHSRFFSKYCLSRHMVIHTGEKNFKCEICGKAYARRKNLREHSQSHEVGQTVCSVCGQNCVDHVGLVAHVSAAHGSLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437281;
- 90% Identity
- -
- 80% Identity
- -