Odup022498.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592717.1:2079358-2084104[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0026 0.19 12.8 2.2 1 23 5 28 5 29 0.94 2 26 0.047 3.4 8.9 1.5 1 23 101 123 101 123 0.98 3 26 0.0031 0.23 12.6 0.2 1 23 127 149 127 149 0.94 4 26 0.003 0.22 12.6 0.3 1 23 154 177 154 177 0.96 5 26 0.0018 0.13 13.3 2.7 1 23 183 206 183 206 0.97 6 26 0.00026 0.019 16.0 0.1 1 23 213 236 213 236 0.96 7 26 0.00016 0.011 16.7 0.4 1 23 242 264 242 264 0.98 8 26 1.1 81 4.6 2.1 1 23 392 415 392 415 0.94 9 26 4 2.9e+02 2.8 0.2 2 23 440 462 439 462 0.93 10 26 0.011 0.79 10.9 0.3 1 23 486 508 486 508 0.97 11 26 0.0021 0.15 13.1 0.4 1 23 512 534 512 534 0.98 12 26 0.00017 0.012 16.6 0.5 1 23 539 562 539 562 0.95 13 26 0.0053 0.39 11.9 0.3 2 23 569 591 569 591 0.93 14 26 0.042 3.1 9.0 6.3 1 23 598 621 598 621 0.96 15 26 9.2e-05 0.0067 17.4 4.7 2 23 628 649 627 649 0.96 16 26 0.00023 0.017 16.1 1.7 1 23 655 677 655 677 0.98 17 26 0.0012 0.09 13.9 2.6 1 23 822 845 822 845 0.97 18 26 0.094 6.9 7.9 0.3 2 23 871 892 870 892 0.97 19 26 0.024 1.7 9.8 0.2 1 23 914 936 914 936 0.98 20 26 4.4e-05 0.0032 18.4 0.3 1 23 940 962 940 962 0.98 21 26 3.3e-05 0.0024 18.8 0.4 1 23 967 990 967 990 0.96 22 26 0.0008 0.059 14.4 0.4 2 23 997 1019 997 1019 0.97 23 26 0.00014 0.01 16.9 1.1 1 23 1026 1049 1026 1049 0.98 24 26 0.0054 0.4 11.8 3.9 2 23 1056 1077 1055 1077 0.96 25 26 3.3e-07 2.4e-05 25.1 1.0 1 23 1083 1105 1083 1105 0.99 26 26 0.3 22 6.3 0.5 2 23 1111 1133 1110 1133 0.91
Sequence Information
- Coding Sequence
- ATGAAGAATTTATACTTGTGCTTTTATTGTGAACAGCGATTTAGTGACCCTGTCAAACTTCGTAATCATAACAATACTGAACATCATTCTATGACAACATATCAAATTAAATACGCCTTGTCGAAAGTTAAGAAATACGAGTTAATAAAGGTAGACATAACAAAGATAGGCTGTAAAATTTGCAATGAAGATTTGTACGATTTCAATgtgttaaaaatacatatagttgACAAACACAAGAAACACGTAGACATCATATCGAGCGATGGTGTACTACCATTTAGAGTAACACAATTTGACTTCCAATGCGCGTTATGCGAAGATAAATACGAAGATTTCAAATCTTTGAACCACCACATGAACGTACACTTCCAGAATTTTATTTGCGAGCAATGTGGTACAGGTTTTATAACGCCTGAACGTTTGAGAACCCATGGCTTCTCTCACGAGACTGGGTCGTTTTCTTGTGACGCTTGCGATAAGGTGTTCCGATCATCAAACGCACAGAAGGAACACTACGCCACTGTCCATATGATGGTTAAACGTCATAGATGTCCGCAATGTCCAGAAACTTTCAGAAATTACTTCCAGAGAAACAAGCACGTATCCACAGTTCATGGTGTGAAACTAAAGGAATACAAATGCACCATGTGTCCTAAAGTGTTCACTTTGAGCGGTAAATTAGGAGTACACGTTAGGGCTgtacatttaaaaatgaaacGGTATTCCTGTAATGCGTGCGAGTGGAAATTTTACTCTAAGGCTGAGTTGAAGGATCATATGATCAGGCATGGTGGAACCGACTCGTCATTAAATGAGGACACAGAGAAGCAGCCCAAAAGAATAGTGCCCCTTTTTCAAGTTGCCTACGATCGGAGCTTATGTAAGCCTCTGGGAACTGTTCTGGACTTCAGTAAATTAAATGCACTGAAATATAAAGTGCTAAACAGTACTCAGTTACCTACAACCTCGAGAGAATTTATTCCTTCTCGCAGCCCGTCACCATTATCACCGGCAGACTCTCCAATACTATACATTCAAGAGGATACGACTATGCCCGTAGAGTTCGTGCATAGACCAAAGATACAGCACAAAGCCCCAGACGTAAGGCAAAACGTTTTGTCAATTTTCGAGTTTTCAACTGTTTACCCCTTCGTCTACAGTAACAATAAGTTTAAATGCTTCGTTTGCTGTCAACCATTCTTTGATACAACTCTTCTCAGAGAGCATATGACGGAGGCGCACACATTCACAGCTCTAAAAAGACTGGTTAATAATAAAAGGGAGAATGTCTTAAAAGTTGACGTTAGTAATATAATGTGCAAGATCTGCTCTGTAAGACCAAAGGATCTGGTGGAGATGAAgcagcatttaaaaaaaatccacgAGAAGCCAATTGATCCGGATTTGCATGACAATATCATTCCGTTTAACTTACAAGCAGTCGACGGTTCCCATAAATGCGTTATATGCAACGAAACCTTTATCAAAGTGAGAGTATTGGTCATACATATGAGCGTACACTTCAACAATTACAGTTGTGAATTTTGCGGGTCAGGATTCATGACTTTACGTCTCCTGAAGAAACATTTAGAAGTTCACGAGAACGGCAACTTCCCCTGTGACAAATGCAACAAAGTGTTCAGTACACCTTACAAGAGAACCCTCCATGTAAGAGGTGTGCACTTGAAACAGTATCCCCGAAGATGCCCGATATGTCCCGAAAGATTCAACTCTAACTACAAGAGGACTATTCACCTGCAAGATGTTCATAACCAATCGACCAGGGTGCATAAGTGCGAGACATGTGGACGTGCGTTTAACCTTAAATATCATCTGATTTGTCACACCCGATCAGTACATTTGCAAGAGAGGAATCAGCAATGCGATGTTTGCCATCAAAGGTTCTGTAACAAGGAGTCTTTAAAGCGCCACATGGTTATACATACTGGTGAAAAGAACCATAAGTGTGATGTATGTGGTATGGCCTTCTTGCGTCGGAAGAACTTGAAAGATCATCTGAGGTTGCATGAAATGGGAATCATCGAAGAAACAAATTCATCCATAATACTGAAAGGAGATGATGGATTGGATATAAAATTAACAGTTCTCAAGACTCCAATATGCCTCGATAATCTCGAATATGAACATGAAGTAATTACGAAAAATCGTAAAAagaaatatacaataaataaaagacGAAAAGAAGttgtaaagaaattaaaaagtgTCAACAACGCTACATTATCTAATATTGCTGTTTTAAAAACACCAATTTCACTGGATGCAGTTAAATGCGAGGATGAACTTAAATCTTCGATAACTTTTAACGTGAAAACTGTACAAGGTACTTTTCTATGTGGACAGTCTCGAAGGACTAAAGAAGATGAAATCTGGAAGCAAAATGCTTTGACTATCTTTGAAAACTCTTACGTATACCCTTTTATTCACGCAAGCAATAAGTACAAATGCTTTATATGCGCCAAATCGTTTCACAATGCAAATCTCTTAAAAGACCATACAAATAAGGATCATACTACTATAGATATGAGAAAAGAATTAAATAATAGAGTTAGAGACAAGAATTTGAAAGTTGATGTCACACAACTGCAGTGTAAACTCTGTTTGGAAATATTAGTAAACTTACAATCTCTAAAAGAACATTTAAAACGACACGGAAAACCAATTGACCCTAATCATCAAGATAACCTTGTGCCTTTTAAATTGAATGGAGACACTTTTGAATGCCAAATCTGTGGCGAAAATTATTTGAAACTGAGACTTCTTATCATTCACATGAGCAAACATTTCAATAATTTCAGCTGTGAAATATGTGGATCCGTTTTTATTTCCATGAATTTATTGAAACGCCATCTTCAAACTCATGAAACTGGCAGTTTTCCTTGCGAAAAATGTGATAAAGTCTTTAGTAATTCAGCGAAAAAGACTTTGCATATGCGAGGGGTCCATTTGAAACAATTTCCAAGAAGATGTCCTATCTGCCCTGAGAGATTCAACTCTGATTATCAAAGAACGAAACATTTGAGGATTATTCATAATCAAACAACCGGGCTATTTAGATGTGAAACTTGCGGTCGGGAGTATGACTTGAAATATCATCTCCTTATACATATCAGATCCGTTCATTTGCAGGAAAGGAACCAAGAGTGTCCTATCTGCCATTCAAGATTCTTCTCCAAATACTGTTTATCCAGGCATATGGTTATTCATACGGGGGAGAAGAATTTCAAATGTGAAATCTGCGGGAAGGCCTATGCTAGAAGAAAGAACTTGAGAGAGCATACTCGATCTCATGAGGTTGGCCAAACTGTTTGTTCTGTGTGTGGACATAATTGTGTAGACCATGTGGGTCTTGTAGCACATGTGAGTGCTGCTCATGGGACTTTGAACTAA
- Protein Sequence
- MKNLYLCFYCEQRFSDPVKLRNHNNTEHHSMTTYQIKYALSKVKKYELIKVDITKIGCKICNEDLYDFNVLKIHIVDKHKKHVDIISSDGVLPFRVTQFDFQCALCEDKYEDFKSLNHHMNVHFQNFICEQCGTGFITPERLRTHGFSHETGSFSCDACDKVFRSSNAQKEHYATVHMMVKRHRCPQCPETFRNYFQRNKHVSTVHGVKLKEYKCTMCPKVFTLSGKLGVHVRAVHLKMKRYSCNACEWKFYSKAELKDHMIRHGGTDSSLNEDTEKQPKRIVPLFQVAYDRSLCKPLGTVLDFSKLNALKYKVLNSTQLPTTSREFIPSRSPSPLSPADSPILYIQEDTTMPVEFVHRPKIQHKAPDVRQNVLSIFEFSTVYPFVYSNNKFKCFVCCQPFFDTTLLREHMTEAHTFTALKRLVNNKRENVLKVDVSNIMCKICSVRPKDLVEMKQHLKKIHEKPIDPDLHDNIIPFNLQAVDGSHKCVICNETFIKVRVLVIHMSVHFNNYSCEFCGSGFMTLRLLKKHLEVHENGNFPCDKCNKVFSTPYKRTLHVRGVHLKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHEMGIIEETNSSIILKGDDGLDIKLTVLKTPICLDNLEYEHEVITKNRKKKYTINKRRKEVVKKLKSVNNATLSNIAVLKTPISLDAVKCEDELKSSITFNVKTVQGTFLCGQSRRTKEDEIWKQNALTIFENSYVYPFIHASNKYKCFICAKSFHNANLLKDHTNKDHTTIDMRKELNNRVRDKNLKVDVTQLQCKLCLEILVNLQSLKEHLKRHGKPIDPNHQDNLVPFKLNGDTFECQICGENYLKLRLLIIHMSKHFNNFSCEICGSVFISMNLLKRHLQTHETGSFPCEKCDKVFSNSAKKTLHMRGVHLKQFPRRCPICPERFNSDYQRTKHLRIIHNQTTGLFRCETCGREYDLKYHLLIHIRSVHLQERNQECPICHSRFFSKYCLSRHMVIHTGEKNFKCEICGKAYARRKNLREHTRSHEVGQTVCSVCGHNCVDHVGLVAHVSAAHGTLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437281;
- 90% Identity
- -
- 80% Identity
- -